Pairwise Alignments

Query, 349 a.a., hydroxymethylglutaryl-CoA synthase from Methanococcus maripaludis S2

Subject, 319 a.a., 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) from Shewanella loihica PV-4

 Score = 53.1 bits (126), Expect = 9e-12
 Identities = 72/301 (23%), Positives = 113/301 (37%), Gaps = 23/301 (7%)

Query: 6   IVGYGSDLPKYRIKAEDIAGAWGKDAQAIKRGLVVNEKSVPGPDEDTATIAVQSARRALS 65
           I+G GS LP      +D+        Q I     ++E+ +   DE  +T+   +A RAL 
Sbjct: 5   ILGTGSYLPAQVRSNQDLEKMVDTSDQWIVERTGISERRIAAEDESVSTMGYAAAVRALE 64

Query: 66  RAGINPKDIGAVYVGSESHPYAVKPTSGIVAEACGVSPDFTAADLEFACKAGTAGIQMCM 125
            AG++P ++  +  G+ S   A    +  +    GV     A D+  AC      + +  
Sbjct: 65  MAGVDPSELDMIVCGTTSANNAFPAAACEIQAMLGVH-TIPAFDVAAACSGFVYALSVAD 123

Query: 126 GLVGSEMMEYAMAVGADTAQG--APGDALEYTAAAGGA-AFIIGAKKEEFIAKFNGTYSY 182
             V +   +  + +GAD       P D         GA A ++GA +E  I     T+ Y
Sbjct: 124 QFVKTGAAKKVLVIGADVLSRLCEPEDRTTIILFGDGAGAAVVGASEEPGII---STHIY 180

Query: 183 TTDTP------DFWRREHEHYPKHGGRFTGEPAYFKHVLNGAKGMMEKM----GTTSKDY 232
                       F  R  E     G         FK  +     ++ +          + 
Sbjct: 181 ADGRQGDLLKCSFPPRASESSEAVGYMTMKGNDVFKVAVTQLSHVVTETLRINQIDKSEI 240

Query: 233 DYCVFHQPNGKFYLTAAKKLGFTEEQYKYGLLTPYLGNTYSGAVPLGLSNILDHAKADDR 292
           D+ V HQ N +     AKKL  + +  K  L     GNT + +VP+     LD A  D R
Sbjct: 241 DWLVPHQANFRIIKATAKKLDMSLD--KVVLTLAKHGNTSAASVPIA----LDEAVRDGR 294

Query: 293 I 293
           I
Sbjct: 295 I 295