Pairwise Alignments

Query, 410 a.a., translation initiation factor IF-2 subunit gamma from Methanococcus maripaludis S2

Subject, 673 a.a., selenocysteine-specific translation elongation factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 93.6 bits (231), Expect = 2e-23
 Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 42/242 (17%)

Query: 15  GHVDHGKTSLTRKLTGVWTDTHSEELKRGISIRLGYADCEIKKCETCDEPECYTVGKKCD 74
           GHVDHGK++L R LTG+ TD   EE +RG++I LGYA   ++                  
Sbjct: 7   GHVDHGKSTLIRALTGMNTDRLPEEKRRGMTIDLGYAFMPLRDGT--------------- 51

Query: 75  SCGGKLQTLRKISFVDAPGHETLMATMLSGASLMDGAILVIAASEECPQPQTKEHLMALD 134
                     +++F+D PGHE  +  ML G S +  A+LV+A  +    PQT+EHL  L 
Sbjct: 52  ----------RLAFIDVPGHEKFINNMLVGVSHVRHALLVLACDDGV-MPQTREHLQILA 100

Query: 135 ALGVEKIIIVQNKIDLVSEEAAV----ENYNQIKEFTKGTVAENAPIIPVSAHHGANLDV 190
            L +  + +V  K DLV ++ A     E    + E+  G  A     +  S    A ++ 
Sbjct: 101 LLPLNSLTLVLTKRDLVDDQTAAKLASEGITLLAEY--GIEASGVFEVCASDAGDAGVET 158

Query: 191 LLKAIQDFI--PTPERDETVSPKLYVARSFDVNKPGSEIKDLKGGVIGGSIIQGALKVGD 248
           L + I D     + + ++  S ++ + R+F V   G         V+ G++I G++ VGD
Sbjct: 159 LKQHILDIAEQQSTQAEDASSFRMTLDRAFSVKGVGC--------VVTGTVISGSVCVGD 210

Query: 249 EL 250
            L
Sbjct: 211 SL 212