Pairwise Alignments

Query, 436 a.a., diaminopimelate decarboxylase from Methanococcus maripaludis S2

Subject, 414 a.a., diaminopimelate decarboxylase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  267 bits (682), Expect = 5e-76
 Identities = 154/411 (37%), Positives = 241/411 (58%), Gaps = 16/411 (3%)

Query: 16  LKIDGHDASKLASTYGTPLYVMSETQTVKNFTRYVESFKEYSEKTGKEFIISFAYKANTN 75
           L  +G   + LA TYGTPLY+ S     +++  +  +        G   ++ +A KAN+N
Sbjct: 11  LYAEGCRVNDLAQTYGTPLYIYSRATLERHWHAFNNAV------AGHPHLVCYAVKANSN 64

Query: 76  LAVTRLLSKLGCGADIVSAGELYIAKLSDVPSEKIVFNGNCKLKEEIKMGIEAEIRAFNV 135
           LAV  +L++LG G DIVS GEL     +     K+VF+G  K   E++  +   I  FNV
Sbjct: 65  LAVLNVLARLGSGFDIVSGGELARVIEAGGDPAKVVFSGVGKTVAEMEQALNLGIYCFNV 124

Query: 136 DSISELVLINETAKEMGKIANVAFRVNPNVDAKTHPKISTGMKKNKFGLDIESGIALETI 195
           +S +EL  +N  A  +GK+A V+ RVNP+VDA THP ISTG+K+NKFG+ ++   A+   
Sbjct: 125 ESSAELEQLNLVAGRLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDEAEAV--F 182

Query: 196 KMAEKMENVKIVGIHCHIGSQLTYISPFVEEARKIMDFVVLLKNEGIKIRDVNLGGGLGI 255
             A  + ++++ G+ CHIGSQLT I PF++   +++  +  L  +GI I   ++GGGLG+
Sbjct: 183 ARAHALPHLQVKGVDCHIGSQLTEIQPFLDAMDRMLSLIDRLAEQGIVIEHFDVGGGLGV 242

Query: 256 PYDKNTKIPVQKDLSKAVLDVIYEYEGKIELPNLILEPGRSLVATAGVLLGTVEHVKETP 315
            YD  T  P   D+  A L    +  G  +L  LI EPGR++ A AG+ +  V ++KE  
Sbjct: 243 TYDDET--PPHPDVYAAAL---LKRLGHRKL-KLIFEPGRAIAANAGIFVTEVLYLKENS 296

Query: 316 VAKWVMIDAGMNDMMRPAIYESYHEITPCTIRAEK-EVVSVAGGLCESSDVFGKDREISK 374
             ++ ++D  MND++RPA+Y ++ +I P T R ++  V  + G +CE+ D  GKDRE + 
Sbjct: 297 DKRFAIVDGAMNDLIRPALYSAWQKIIPVTPRDDQAHVFDIVGPVCETGDFLGKDREFA- 355

Query: 375 MEVKDTVAILDVGAYGISMANNYNSRGKPAMILTNEKEVSLIRARETLADL 425
           +   D + +   GAYG +MA+NYN+R + A ++ +  +  L+R RE L  L
Sbjct: 356 IAPGDLLVVRSSGAYGFAMASNYNTRPRAAEVMVDGDKAYLVREREKLPQL 406