Pairwise Alignments

Query, 436 a.a., diaminopimelate decarboxylase from Methanococcus maripaludis S2

Subject, 391 a.a., decarboxylase, pyridoxal-dependent (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 93.6 bits (231), Expect = 1e-23
 Identities = 94/373 (25%), Positives = 165/373 (44%), Gaps = 32/373 (8%)

Query: 25  KLASTYGTPLYVMSETQTVKNFTRYVESFKEYSEKTGKEFIISFAYKANTNLAVTRLLSK 84
           + A    TP  V+  +   K +   V SF  Y++       + +A KAN    +  LL  
Sbjct: 23  EFAKDKATPFVVIDTSIIAKQYDDMVNSFP-YAD-------VYYAVKANPAAEILTLLKD 74

Query: 85  LGCGADIVSAGELYIAKLSDVPSEKIVFNGNCKLKEEIKMGIEAEIRAFNVDSISELVLI 144
            G   DI S  EL +     V ++++ +    K +++++   E  +R +  DS ++L +I
Sbjct: 75  KGSNFDIASIYELDMVMNVGVTADRVSYGNTIKKRQDVRAFYERGVRMYASDSEADLRMI 134

Query: 145 NETAKEMGKIANVAFRVNPNVDAKTHPKISTGMKKNKFGLDIESGIALETIKMAEKMENV 204
            E A        +   +    D    P         KFG   E  +A E + +A ++  +
Sbjct: 135 AEEAPGSRIYVRI---LTEGTDTADWPL------SRKFGCQNE--MAYELLVLANEL-GL 182

Query: 205 KIVGIHCHIGSQLTYISPFVEEARKIMDFVVLLKNE-GIKIRDVNLGGGLGIPY-DKNTK 262
           +  GI  H+GSQ   I  +     K+      L++E  I ++ +N+GGG    Y DK  +
Sbjct: 183 EPYGISFHVGSQQRDIGAWDSAIGKVKSIFDRLRDEHNIVLKMINMGGGFPANYIDKTNQ 242

Query: 263 IPVQKDLSKAVLDVIYEYEGKIELPNLILEPGRSLVATAGVLLGTVEHVKE---TPVAKW 319
           + V    ++ +   + E  G  +LP +ILEPGRSL++ AGVL+  V  + +   T + +W
Sbjct: 243 LGVY---AEQITHFLKEDFGD-DLPQIILEPGRSLISNAGVLVSEVVLISKKSYTALERW 298

Query: 320 VMIDAGMNDMMRPAIYESYHEITPCTIRAEKEVVSVAGGLCESSDVFGKDREI---SKME 376
           V  D G    +   + E+         + E E   +AG  C+S+D+  +       + + 
Sbjct: 299 VFTDVGKFSGLIETMDEAIKFPIFTHKQGELEKCVIAGPTCDSADIMYEHYSYGLPNDLA 358

Query: 377 VKDTVAILDVGAY 389
           + D +  L  GAY
Sbjct: 359 IGDRMYWLTAGAY 371