Pairwise Alignments

Query, 284 a.a., winged helix-turn-helix transcriptional regulator from Methanococcus maripaludis S2

Subject, 236 a.a., transcriptional regulator PhoU (RefSeq) from Shewanella amazonensis SB2B

 Score = 53.1 bits (126), Expect = 6e-12
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 19/190 (10%)

Query: 85  MGTNVIQNIDNVFDSLKTHDLDIAKSIILEDYALNRME----DEVNLVIKMKASKYMDMN 140
           MG  V + ++   D+L   D ++AK +I  D+ +N ME    +E   +I  +     D+ 
Sbjct: 28  MGGLVERQLEQALDALGGLDAELAKRVIDGDHKVNGMEVSIDEECTRIIAKRQPAASDLR 87

Query: 141 SLMQVSNIAANIERCGDYLSNIAEEVVNGLLVDPTINKEVFEIKEIISKMFTHAMNMVKS 200
            ++ +S   A++ER GD    IA+  +         N     +   I  M  HA  M+ S
Sbjct: 88  LIIAISKTIADLERIGDASVRIAKAALEKR------NNNQQPLLVSIESMGRHATRMLHS 141

Query: 201 KT-------IET--EIYELEGNLHKKLDTIMEKIAEHPDENLKDINQFIQFGMFLKDVER 251
                    +E+  E++  +  L K+ + I+ ++  +  E+ + I   +      + VER
Sbjct: 142 TLDALARMDVESALELHREDARLDKEYEGIIRQLMTYMMEDPRSIPGVLDVLWAARAVER 201

Query: 252 FGDRCLKIFE 261
            GDRC  I E
Sbjct: 202 VGDRCKNICE 211



 Score = 29.6 bits (65), Expect = 7e-05
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 81  TFDRMGTNVIQNIDNVFDSLKTHDLDIAKSIILEDYALNRMEDEVNLVIKMKASKYMD-- 138
           + + MG +  + + +  D+L   D++ A  +  ED    R++ E   +I+   +  M+  
Sbjct: 127 SIESMGRHATRMLHSTLDALARMDVESALELHREDA---RLDKEYEGIIRQLMTYMMEDP 183

Query: 139 --MNSLMQVSNIAANIERCGDYLSNIAEEVV 167
             +  ++ V   A  +ER GD   NI E ++
Sbjct: 184 RSIPGVLDVLWAARAVERVGDRCKNICEYII 214



 Score = 22.7 bits (47), Expect = 0.008
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 176 INKEVFEIKEIISKMFTHAMNMVKSKTIETEIYELEGNLHK------KLDTIMEKIAEHP 229
           I   V  +  ++ +    A++ +     E     ++G+ HK       +D    +I    
Sbjct: 21  IRNRVLAMGGLVERQLEQALDALGGLDAELAKRVIDGD-HKVNGMEVSIDEECTRIIAKR 79

Query: 230 DENLKDINQFIQFGMFLKDVERFGDRCLKIFELGREFHHN 269
                D+   I     + D+ER GD  ++I +   E  +N
Sbjct: 80  QPAASDLRLIIAISKTIADLERIGDASVRIAKAALEKRNN 119