Pairwise Alignments

Query, 284 a.a., winged helix-turn-helix transcriptional regulator from Methanococcus maripaludis S2

Subject, 233 a.a., transcriptional regulator PhoU (RefSeq) from Shewanella loihica PV-4

 Score = 54.7 bits (130), Expect = 2e-12
 Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 19/190 (10%)

Query: 85  MGTNVIQNIDNVFDSLKTHDLDIAKSIILEDYALNRME----DEVNLVIKMKASKYMDMN 140
           MG  V + ++   D+L   D D+A+ +I  D+++N ME    +E   +I  +     D+ 
Sbjct: 28  MGGLVERQLEQALDALGNLDADLAQKVIDGDHSVNGMEVSIDEECTRIIAKRQPAASDLR 87

Query: 141 SLMQVSNIAANIERCGDYLSNIAEEVVNGLLVDPTINKEVFEIKEIISKMFTHAMNMVKS 200
            ++ +S   A++ER GD    IA   ++  L      K    +   I  M  HA   + S
Sbjct: 88  LIIAISKTIADLERIGDACVKIAAAALDKRL------KNQQPLLVSIEHMGRHATRTLHS 141

Query: 201 ---------KTIETEIYELEGNLHKKLDTIMEKIAEHPDENLKDINQFIQFGMFLKDVER 251
                      +  E+++ +  L  + + I+ ++  +  E+ + I + +      + VER
Sbjct: 142 TLDALARMDADVAIELHKEDSKLDSEYEGIIRQLMTYMMEDPRSIPEVLDVLWAARAVER 201

Query: 252 FGDRCLKIFE 261
            GDRC  I E
Sbjct: 202 VGDRCQNICE 211



 Score = 35.0 bits (79), Expect = 2e-06
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 81  TFDRMGTNVIQNIDNVFDSLKTHDLDIAKSIILEDYALNRMEDEVNLVIKMKASKYM-DM 139
           + + MG +  + + +  D+L   D D+A  +  ED   ++++ E   +I+   +  M D 
Sbjct: 127 SIEHMGRHATRTLHSTLDALARMDADVAIELHKED---SKLDSEYEGIIRQLMTYMMEDP 183

Query: 140 NSLMQVSNI---AANIERCGDYLSNIAEEVV 167
            S+ +V ++   A  +ER GD   NI E ++
Sbjct: 184 RSIPEVLDVLWAARAVERVGDRCQNICEYII 214