Pairwise Alignments

Query, 284 a.a., winged helix-turn-helix transcriptional regulator from Methanococcus maripaludis S2

Subject, 236 a.a., transcriptional regulator PhoU (RefSeq) from Shewanella sp. ANA-3

 Score = 57.8 bits (138), Expect = 2e-13
 Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 21/191 (10%)

Query: 85  MGTNVIQNIDNVFDSLKTHDLDIAKSIILEDYALNRME----DEVNLVIKMKASKYMDMN 140
           MG  V + ++   D+L T D ++A+ +I  D+ +N ME    +E   +I  +     D+ 
Sbjct: 28  MGGLVERQLEQAIDALSTLDAELAQKVITGDHKVNGMEVSIDEECTRIIAKRQPAASDLR 87

Query: 141 SLMQVSNIAANIERCGDYLSNIAEEVVNGLLVDPTINKEVFEIKEIISKMFTHAMNMVKS 200
            ++ +S   A++ER GD    IA+  +     D  +N +   +   I  M  HA+ M+ +
Sbjct: 88  LIIAISKSIADLERIGDACVRIAKAAL-----DKRLNNQQ-PLLVSIENMGRHAIRMLHA 141

Query: 201 KTIET----------EIYELEGNLHKKLDTIMEKIAEHPDENLKDINQFIQFGMFLKDVE 250
            T++           E+++ +  L ++ + I+ ++  +  E+ + I   +      + VE
Sbjct: 142 -TLDALARMDADSALELHKEDAKLDREYEGIIRQLMTYMMEDPRSIPDVLDVLWAARAVE 200

Query: 251 RFGDRCLKIFE 261
           R GDRC  I E
Sbjct: 201 RVGDRCKNICE 211



 Score = 32.7 bits (73), Expect = 8e-06
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 81  TFDRMGTNVIQNIDNVFDSLKTHDLDIAKSIILEDYALNRMEDEVNLVIKMKASKYMDMN 140
           + + MG + I+ +    D+L   D D A  +  ED  L+R  +   ++ ++      D  
Sbjct: 127 SIENMGRHAIRMLHATLDALARMDADSALELHKEDAKLDR--EYEGIIRQLMTYMMEDPR 184

Query: 141 SLMQVSNI---AANIERCGDYLSNIAEEVV 167
           S+  V ++   A  +ER GD   NI E ++
Sbjct: 185 SIPDVLDVLWAARAVERVGDRCKNICEYII 214