Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 260 a.a., Alkanesulfonates transport system permease protein from Pseudomonas fluorescens FW300-N2E2

 Score =  142 bits (357), Expect = 9e-39
 Identities = 77/251 (30%), Positives = 140/251 (55%), Gaps = 9/251 (3%)

Query: 2   KILKNLT---LPIIGILAWE-ALAIYLNNPVILPKVESVISILLNPGVGILGTGNLIENT 57
           KI+ NL    +P++ +  W+ +++    +  ILP   +VI      G  ++ +G +  + 
Sbjct: 3   KIIHNLAPWAVPLLLLAVWQLSVSTGWLSTRILPAPVAVIEA----GANLVRSGEIWTHL 58

Query: 58  IVSIKRVLIGFFIAGAFAIPLGLLMGYYSLINDLFDTTVELLRPIPPLAWVPLALAWFGI 117
            +S  R  +GF I G   + LG + G       L D++V++LR IP LA +PL + WFGI
Sbjct: 59  AISGWRAAVGFLIGGGIGLALGFITGLSKWGERLLDSSVQMLRNIPHLALIPLVILWFGI 118

Query: 118 GESSMHFIIFIGAFFPILINTISGVKSVPVIMIEAAKTLGGSTKDILKSVVVPASSPDIL 177
            ES+  F++ +G  FPI +NT  G+++V   ++E +++ G S   + + V++P + P IL
Sbjct: 119 DESAKIFLVALGTLFPIYLNTYHGIRNVDPALVEMSRSYGLSGLRLFRQVILPGALPSIL 178

Query: 178 TGLRVGAGIAWMCVVAAEMLPGSDAGLGYLIMYAYSLSKMNIVVASMIIIGIIGIILDKG 237
            G+R   G  W+ ++ AE +  S AG+GYL M A    + ++VV ++++  ++G + D  
Sbjct: 179 VGVRFALGFMWLTLIVAETISAS-AGIGYLAMNAREFLQTDVVVLAILLYAVLGKLADLA 237

Query: 238 LRYIEKKYFCW 248
            R +E+ +  W
Sbjct: 238 ARGLERVWLRW 248