Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 261 a.a., ABC-type nitrate/sulfonate/bicarbonate transport system, permease component from Pseudomonas stutzeri RCH2

 Score =  147 bits (372), Expect = 2e-40
 Identities = 78/241 (32%), Positives = 138/241 (57%), Gaps = 6/241 (2%)

Query: 9   LPIIGILAWEALAIY-LNNPVILPKVESVISILLNPGVGILGTGNLIENTIVSIKRVLIG 67
           LP+  + AW+   ++ L +  ILP   +V++     G  +LG+G L  +  +S  R  IG
Sbjct: 15  LPVALLAAWQGAVVFGLLSTRILPGPSAVLAA----GWDLLGSGELWTHLTISGWRAGIG 70

Query: 68  FFIAGAFAIPLGLLMGYYSLINDLFDTTVELLRPIPPLAWVPLALAWFGIGESSMHFIIF 127
           F I G   + LG + G  +    L D++V+++R +P LA +PL + WFGI ES+  F++ 
Sbjct: 71  FAIGGGIGLLLGFITGLSTWGERLLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVA 130

Query: 128 IGAFFPILINTISGVKSVPVIMIEAAKTLGGSTKDILKSVVVPASSPDILTGLRVGAGIA 187
           +G  FPI +NT  G+++V   ++E A++ G S   + + V++P + P IL G+R   G  
Sbjct: 131 LGTLFPIYLNTYHGIRNVDPALVEMARSYGLSGFALFRQVILPGALPSILVGVRFALGFM 190

Query: 188 WMCVVAAEMLPGSDAGLGYLIMYAYSLSKMNIVVASMIIIGIIGIILDKGLRYIEKKYFC 247
           W+ ++ AE +  S AG+GYL M A    + ++VV ++++  ++G + D   R +E+ +  
Sbjct: 191 WLTLIVAETISAS-AGIGYLAMNAREFLQTDVVVLAILLYALLGKLADLAARSLERAWLR 249

Query: 248 W 248
           W
Sbjct: 250 W 250