Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 292 a.a., ABC-type nitrate/sulfonate/bicarbonate transport system, permease component from Pseudomonas stutzeri RCH2

 Score =  147 bits (372), Expect = 2e-40
 Identities = 80/245 (32%), Positives = 142/245 (57%), Gaps = 9/245 (3%)

Query: 7   LTLPIIGILAWEALAIYLNNPVILPKVESVISILLNPGVGILGTGN-LIENTIVSIKRVL 65
           L+LP +    W AL   L +P+ +P   +V+       +G   T   L+ +  +S+ RV+
Sbjct: 55  LSLPFVVWWLWTALG--LADPMFMPSPGAVLE-----RIGRWWTSEGLLGDIGISVWRVM 107

Query: 66  IGFFIAGAFAIPLGLLMGYYSLINDLFDTTVELLRPIPPLAWVPLALAWFGIGESSMHFI 125
            GF  +   A+PLGL +G Y  +    +   + +R +P +A++PL + W GI E S   I
Sbjct: 108 AGFGASALIALPLGLYIGTYRPVQAFLEPLTDFIRYMPAVAFIPLVMLWVGIDEGSKVLI 167

Query: 126 IFIGAFFPILINTISGVKSVPVIMIEAAKTLGGSTKDILKSVVVPASSPDILTGLRVGAG 185
           IFIG FF +++     V+ VP+  IEAA+T+G +  +I+K V++P++ P +L  LR+  G
Sbjct: 168 IFIGTFFQMVLMVAEDVRRVPMAQIEAAQTMGANRGEIVKLVILPSAKPALLDTLRITCG 227

Query: 186 IAWMCVVAAEMLPGSDAGLGYLIMYAYSLSKMNIVVASMIIIGIIGIILDKGLRYIEKKY 245
            AW  +V AE++  +++GLGY I+ A      + + A +++IG+IG++ D+  R++ ++ 
Sbjct: 228 WAWTYLVVAELV-AANSGLGYAILKAQRYMHTDKIFAGILLIGLIGLLTDQAFRWLHRRA 286

Query: 246 FCWKK 250
           F W +
Sbjct: 287 FPWMR 291