Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 278 a.a., nitrate transport permease from Synechococcus elongatus PCC 7942

 Score =  148 bits (373), Expect = 1e-40
 Identities = 90/250 (36%), Positives = 139/250 (55%), Gaps = 11/250 (4%)

Query: 4   LKNLTLPIIGILA----WEAL----AIYLNNPVILPKVESVISILLNPGV--GILGTGNL 53
           L  + LP+ GIL     W+      A  L  P+ L   E    +LL P +  G L  G L
Sbjct: 24  LDGILLPLAGILGFLIIWQIFSSSGATRLPGPLSLFTEERTRELLLYPFLDRGGLDKG-L 82

Query: 54  IENTIVSIKRVLIGFFIAGAFAIPLGLLMGYYSLINDLFDTTVELLRPIPPLAWVPLALA 113
              TI S+ RV  GF IA    I +G+L+G    +N + D   + LR I PLAWVP+AL 
Sbjct: 83  FWQTIASLTRVAQGFSIAAIIGISVGILVGLNRQLNAMLDPLFQFLRMIAPLAWVPIALV 142

Query: 114 WFGIGESSMHFIIFIGAFFPILINTISGVKSVPVIMIEAAKTLGGSTKDILKSVVVPASS 173
            F   + +  F+IFI A +PILINT  GV+ +P      A+ L  S    L  VV+PA+ 
Sbjct: 143 AFQQNQPAAIFVIFITAVWPILINTAEGVRQIPQDYNNVARVLRMSKSKYLMKVVLPAAL 202

Query: 174 PDILTGLRVGAGIAWMCVVAAEMLPGSDAGLGYLIMYAYSLSKMNIVVASMIIIGIIGII 233
           P I TGLR+  G++W+ ++AAE++     G+G+ I  AY  + ++ ++ ++I IG +G++
Sbjct: 203 PYIFTGLRIAIGLSWLAIIAAEIVMSGIVGIGFFIWDAYQQNYVSDIILAVIYIGAVGLL 262

Query: 234 LDKGLRYIEK 243
           LD+ + ++++
Sbjct: 263 LDRFVAWLQR 272