Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 297 a.a., nitrate ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  142 bits (359), Expect = 6e-39
 Identities = 79/227 (34%), Positives = 136/227 (59%), Gaps = 8/227 (3%)

Query: 15  LAWEALAIYLNNPVILPK--VESVISILLNP---GVGILGTGNLIENTIVSIKRVLIGFF 69
           LAW+ +     + +  P   +E    ++ +P   G G+     L  +   S++RV +G+ 
Sbjct: 58  LAWQLICSSPESSLPAPSRVLEESWELIAHPFYIGQGV--DQGLFWHVFASLQRVALGYA 115

Query: 70  IAGAFAIPLGLLMGYYSLINDLFDTTVELLRPIPPLAWVPLALAWFGIGESSMHFIIFIG 129
           +A A  + LG L+G  +L     D   ++LR +PPLAW+PL+LA F  G  S  F+IFI 
Sbjct: 116 MAAAVGVALGTLVGQSALAMRGLDPIFQVLRTVPPLAWLPLSLAAFQDGTPSAIFVIFIT 175

Query: 130 AFFPILINTISGVKSVPVIMIEAAKTLGGSTKDILKSVVVPASSPDILTGLRVGAGIAWM 189
           A +PI+INT  G++++P      AK L  ++ +    +++PA++P I TGLR+G G++W+
Sbjct: 176 AIWPIIINTAVGIRNIPQDYQNVAKVLRLNSFEYFGKIMLPAAAPYIFTGLRIGIGLSWL 235

Query: 190 CVVAAEMLPGSDAGLGYLIMYAYSLSKMNIVVASMIIIGIIGIILDK 236
            +VAAEML G   G+G+ I  A++ S ++ ++ ++I +GI+G +LD+
Sbjct: 236 AIVAAEMLIGG-VGIGFFIWDAWNSSLISDIIVALIYVGIVGFLLDR 281