Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 294 a.a., nitrate ABC transporter, permease protein from Klebsiella michiganensis M5al

 Score =  147 bits (372), Expect = 2e-40
 Identities = 82/257 (31%), Positives = 148/257 (57%), Gaps = 14/257 (5%)

Query: 3   ILKNLTLPIIGI----LAWEALAIYLNN-PVILPKVESVISILLNP----GVGILGTGNL 53
           + + L  P++G+    L W+  A+     P  L  ++S +++  +P    G   +G G  
Sbjct: 42  VTQRLLPPLLGLGLLLLGWQLAAMNSKGFPTPLSTLDSALTLFADPFYQDGPNDMGIG-- 99

Query: 54  IENTIVSIKRVLIGFFIAGAFAIPLGLLMGYYSLINDLFDTTVELLRPIPPLAWVPLALA 113
             N + S++RV +GF +A    IPLG L+G       +F+  + LLRP+ PLAW+P+ L 
Sbjct: 100 -WNVLASLQRVAVGFGLAALAGIPLGFLIGRSLFFARMFNPLIALLRPVSPLAWLPIGLL 158

Query: 114 WFGIGESSMHFIIFIGAFFPILINTISGVKSVPVIMIEAAKTLGGSTKDILKSVVVPASS 173
            F   E +  + IFI + +P++INT  GV+ +P   +  A+ L  S   +++ ++ PA  
Sbjct: 159 LFQKAEPASSWTIFICSIWPMVINTAEGVRRIPEDYLNVARVLQLSEWTVMRKILFPAVL 218

Query: 174 PDILTGLRVGAGIAWMCVVAAEMLPGSDAGLGYLIMYAYSLSKMNIVVASMIIIGIIGII 233
           P +LTG+R+  GIAW+ +VAAEML G   G+G+ I   ++   +  ++ ++ IIG++G++
Sbjct: 219 PAVLTGVRLSIGIAWLVIVAAEMLTGG-LGIGFWIWNEWNNLNVENIIIAIAIIGVVGLL 277

Query: 234 LDKGLRYIEKKYFCWKK 250
           L++GL  + ++ F W++
Sbjct: 278 LEQGLMLLARR-FSWQE 293