Pairwise Alignments

Query, 348 a.a., iron ABC transporter permease from Methanococcus maripaludis S2

Subject, 380 a.a., iron-compound ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  191 bits (485), Expect = 3e-53
 Identities = 114/305 (37%), Positives = 176/305 (57%), Gaps = 18/305 (5%)

Query: 56  ASSNLVIWNIRLPRIFAAILCGIGLSVSGAVMQCVLRNPLASPYTMGISHGAMFGACVAI 115
           A ++ ++  +RLPRI  A + G GLS++G+V+Q V RNPLA PY  GIS GA FGA V +
Sbjct: 74  AMTDRIVMELRLPRILLAFVAGAGLSLAGSVLQTVTRNPLADPYLFGISSGASFGAVVML 133

Query: 116 ITLGIGGAESTGHIAINNP-------------YSITIFAFLGSLLGVCAVLILAKLKGLS 162
                 G  +   +  N+              +S+   AF+G+ L V  VL L+ L GL+
Sbjct: 134 TLFSGSGFFANAGVIANSGIFSGAEILAGLQWFSLPFGAFIGASLSVLIVLALSGL-GLN 192

Query: 163 P--EAMVLAGVAISSLFTAATTLIQYFADDMQLAAMVYWSFGDLGRPLWPEVKIMAFVAF 220
              E M+L+GVA S +F A T+L+ YFA     A++++WS G   +  W  + +   V  
Sbjct: 193 SQVERMLLSGVATSFMFGALTSLLLYFASPQATASVLFWSLGSFAKASWSLLILPTIVVL 252

Query: 221 VSLIYFIHKRWDYNALESGEETAKSLGVNTDKIRLSGMLVASLVTSVCVAFLGIIGFVGL 280
           VS    +  +    AL++G+ETA +LGVN  K+RL+ +L+ SL+T++ VA  G IGFVGL
Sbjct: 253 VSFFIILGWKRQIMALQAGDETAHTLGVNVPKLRLNMLLLCSLITAILVATCGGIGFVGL 312

Query: 281 ICPHIIRITVGGDYRYLIPLCSIFGAVLVLLADTIARTIISPIILPVGILTSFLGAPMFL 340
           + PH +R+   G  R  I L ++ G + ++  D +AR ++    LPVGI+T+ +G+  FL
Sbjct: 313 MIPHTVRLLFPG--RQPILLTALVGGLFMVWIDVLARCLLGNQELPVGIITASIGSFFFL 370

Query: 341 YLLTK 345
            +L +
Sbjct: 371 LILRR 375