Pairwise Alignments

Query, 585 a.a., radical SAM protein from Methanococcus maripaludis S2

Subject, 368 a.a., radical SAM domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  107 bits (268), Expect = 6e-28
 Identities = 96/338 (28%), Positives = 147/338 (43%), Gaps = 34/338 (10%)

Query: 3   CTVCEIGCDISEGNYGRCNMYTNQNSKLIERFPNSYLTVLPITIETMPMVHFAPKNKFLQ 62
           C +C   C + EG  GRC +  N+   L     +    +    +E  P+ H+ P    L 
Sbjct: 23  CRLCSHYCIVPEGRSGRCGVRHNKGGTLYTLVHDRVAALHVDPVEKKPLFHYLPGTATLS 82

Query: 63  VSTVGCNFNCQGCISETLTSNA--DALSGALT------------KASPTDIISRAKTEEC 108
           + TVGCNF C  C + +L++ A  D +S   T            + +P  ++  A +   
Sbjct: 83  LGTVGCNFTCGFCQNWSLSTAAHDDGVSSPTTVTYVPPRSIPGHQVTPQVLVEEAVSCGA 142

Query: 109 RGIVFCLNDPAASYYTFLNLAKEAKKANLWVGCSTNGYFTETALKSLIPYLDFVNIGLKG 168
             I F  ++P   Y      A  A  + L     +NGY +   L++L P +   NI LK 
Sbjct: 143 ASIAFTYSEPTVFYELMAGTADLALASGLGTIMVSNGYQSRRCLEALRPRIKAANIDLKA 202

Query: 169 SSNARYKE-CGAKSAAPVFRNIRILHEAGVHVETSAMYI---NAGDEEILKAAEEV-ASV 223
            S+  Y++ CGA+  APV  N++ +   G  VE + + I   N  D+E+   A  +   +
Sbjct: 203 FSDRFYRDVCGAR-LAPVLDNLKRMVGFGWWVEVTTLVIPGLNDSDDELAAIARFIHDEL 261

Query: 224 SKDIPLQVMRFVP---FGEAKPELEPTINKSEHIVDQLRSILNHVYLFNSPGTEYLTTKC 280
              +P  + RF P    G   P    T+ ++  I     S L+ VYL N PG    +T C
Sbjct: 262 GAHVPWHISRFHPAHELGHLPPTPLETLERAWKI--GRASGLHFVYLGNLPGHTSESTFC 319

Query: 281 PICGNEIIKREFYGPMGCRTIESLDEG-KCP-CGWQVP 316
           P CG    +R      G RT   L  G +CP CG  +P
Sbjct: 320 PGCGTLFAER-----FGYRT--QLPNGPECPRCGAHIP 350