Pairwise Alignments

Query, 301 a.a., CoB--CoM heterodisulfide reductase subunit B from Methanococcus maripaludis S2

Subject, 247 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 52.0 bits (123), Expect = 1e-11
 Identities = 60/267 (22%), Positives = 102/267 (38%), Gaps = 29/267 (10%)

Query: 11  FLGCIAPNRYPGIESATYKALDKLGIQLHPFEQASCCPAPGV-FGSFDLMTWLTIAARNI 69
           F+ C+     P +  AT + L+KLG Q+      +CC  P    G FD     T+   N 
Sbjct: 6   FIPCLVNQMMPDVAIATLELLEKLGHQVILPAGQTCCGQPMTNSGCFDAARSTTLKLLNA 65

Query: 70  VMAEQADLDILTICNGCYGSLFEANHILQDNENARNKVNEVLSKHGLEYTGKSRVRHLTE 129
               + D  I+     C  +  E  H   ++  A+  +N              ++  LTE
Sbjct: 66  FKGVECDA-IVCPAASCLVAAKENFHEFDNSPEAQAVIN--------------KLYELTE 110

Query: 130 VLYFDYGTEKIAERVERPLDINVAVHYGCHYLKPTDVKHIESSEVPK--SLDGLVEAIGA 187
            L+ D           +P    +++   CH ++   +        P+   ++ ++  I  
Sbjct: 111 FLH-DIAP---IPAFNKPFAHKISLQLSCHGIRMLSLATPSEQMGPRFNKVEAVLANIAG 166

Query: 188 KSIYYKD-KNMCCGAGGGVRARNPEVALEMAETKVKNIIAAGGDCVTEVCPFCHLQFDRG 246
             I Y D ++ CCG GG        V+ +M + K +   A G   V    P C L  D G
Sbjct: 167 IDIVYPDRRDECCGFGGTFAVDEGAVSAKMGKDKAQAHAATGAQYVVGFDPSCLLHLD-G 225

Query: 247 QIEMKETFGREYKLPVIHYAQLLGMAM 273
            I       ++  + + H AQ+L  A+
Sbjct: 226 LIRR-----QQLPIEIRHIAQVLNAAL 247