Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 594 a.a., NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) from Pseudomonas fluorescens FW300-N2E2

 Score = 92.8 bits (229), Expect = 2e-23
 Identities = 89/382 (23%), Positives = 159/382 (41%), Gaps = 26/382 (6%)

Query: 8   IGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICGIC 67
           +GP H +     R+ L ++ E + D    IG +HRG E++ E           ++I  + 
Sbjct: 215 LGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTDRIDYLG 274

Query: 68  SHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSMRC 127
             ++       VE    I++PE+ + IRI++ E  R+ SH L  G   + +G  T     
Sbjct: 275 GVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDVGAMTPVFFT 334

Query: 128 FMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISKYEEGLNKFLER 187
           F  R+    V   I+G R+H +   IGG+         ++  + D +    + L+++ + 
Sbjct: 335 FTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKL--VKDFVEWMPKRLDEYTKA 392

Query: 188 MLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDFDEILF 247
            L + ++  R   V   + K A ++   G   R +    D+RK      Y+ ++F+  L 
Sbjct: 393 ALQNSILKGRTIGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENFEFEVPLA 452

Query: 248 DSGDVFARLAVRFYECLESVKIIRQALDALKD---TSDKRIYNPNYELHEFKPINC---- 300
            +GD + R  VR  E  +S+KII Q L  + +    +D  +  P  +    + I      
Sbjct: 453 ANGDAYDRCMVRVEEMRQSIKIIDQCLRNMPEGPYKADHPLTTPPPKERTLQHIETLITH 512

Query: 301 -----------------YTEAQRGEQYYSYGLDDEGLVRQAKIRTPTATNLGAMEDIVKG 343
                              EA +G   Y    D   +  + +IRTP+  +L  +  ++KG
Sbjct: 513 FLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQQIPSVIKG 572

Query: 344 YHVSDAELIIASCDPCFTCTDR 365
             V+D    + S D      DR
Sbjct: 573 SMVADLIAYLGSIDFVMADVDR 594