Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 593 a.a., NADH dehydrogenase subunit D / NADH dehydrogenase subunit C from Pseudomonas syringae pv. syringae B728a

 Score = 92.0 bits (227), Expect = 4e-23
 Identities = 88/382 (23%), Positives = 159/382 (41%), Gaps = 26/382 (6%)

Query: 8   IGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICGIC 67
           +GP H +     R+ L ++ E + D    IG +HRG E++ E           ++I  + 
Sbjct: 214 LGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTDRIDYLG 273

Query: 68  SHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSMRC 127
             ++       VE    I++PE+ + IRI++ E  R+ SH L  G   + +G  T     
Sbjct: 274 GVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDVGAMTPVFFT 333

Query: 128 FMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISKYEEGLNKFLER 187
           F  R+    V   I+G R+H +   IGG+         ++  + D +    + L+++ + 
Sbjct: 334 FTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKL--VKDFVDWLPKRLDEYTKA 391

Query: 188 MLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDFDEILF 247
            L + ++  R   V   + K A ++   G   R +    D+RK      Y+ ++F+  L 
Sbjct: 392 ALQNSILKGRTIGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENFEFEVPLA 451

Query: 248 DSGDVFARLAVRFYECLESVKIIRQALDALKD---TSDKRIYNPNYELHEFKPINC---- 300
            +GD + R  VR  E  +S+KII Q +  + +    +D  +  P  +    + I      
Sbjct: 452 ANGDAYDRCMVRVEEMRQSIKIIDQCMRNMPEGPYKADHPLTTPPPKERTLQHIETLITH 511

Query: 301 -----------------YTEAQRGEQYYSYGLDDEGLVRQAKIRTPTATNLGAMEDIVKG 343
                              EA +G   Y    D   +  + +IRTP+  +L  +  ++KG
Sbjct: 512 FLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQQIPSVIKG 571

Query: 344 YHVSDAELIIASCDPCFTCTDR 365
             V+D    + S D      DR
Sbjct: 572 SMVADLIAYLGSIDFVMADVDR 593