Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 396 a.a., NADH dehydrogenase subunit D from Sinorhizobium meliloti 1021

 Score = 97.8 bits (242), Expect = 4e-25
 Identities = 96/388 (24%), Positives = 163/388 (42%), Gaps = 30/388 (7%)

Query: 6   IAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICG 65
           I  GP H       RL L ++ EIV+  +  IG+ HRG E+L+E     +A    +++  
Sbjct: 11  INFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQAIPYFDRLDY 70

Query: 66  ICSHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSM 125
           +       + A  VE     ++P R   IR++  E+ R+ SH L        +G  T  +
Sbjct: 71  VAPMNQEHAFALAVERLTGTQVPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130

Query: 126 RCFMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISKYEEGLNKFL 185
             F  RE +M  +    G+R+H +    GG+    ++    +  I + I  + + ++   
Sbjct: 131 WGFEEREKLMVFYERACGARMHAAYFRPGGVHQ--DLPHQLVEDIGNWIDPFLKTVDDID 188

Query: 186 ERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDFDEI 245
           E +  + +   R  D+GV+  + A  +   G   RGS    D+R+      Y   +FD  
Sbjct: 189 ELLTGNRIFKQRNVDIGVVSLEDAWAWGFSGVMVRGSGAAWDLRRSQPYECYSDLEFDIP 248

Query: 246 LFDSGDVFARLAVRFYECLESVKIIRQALDAL--------KDTSDKRIYNPNYE------ 291
           +  +GD F R  +R  E  +S +I+RQ +D L          + D +I  P         
Sbjct: 249 IGKNGDCFDRYLIRMIEMRQSARIMRQCVDRLLGDAKIGPVSSLDGKIVPPKRGEMKRSM 308

Query: 292 ---LHEFK-----------PINCYTEAQRGEQYYSYGLDDEGLVRQAKIRTPTATNLGAM 337
              +H FK            +    EA +GE       D      + KIR P   +L AM
Sbjct: 309 EALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAPGYAHLQAM 368

Query: 338 EDIVKGYHVSDAELIIASCDPCFTCTDR 365
           + + +G+ ++D   ++ S D  F   DR
Sbjct: 369 DFLCRGHQLADVSAVLGSLDIVFGEVDR 396