Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 392 a.a., NADH dehydrogenase I, D subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  103 bits (257), Expect = 8e-27
 Identities = 100/385 (25%), Positives = 169/385 (43%), Gaps = 34/385 (8%)

Query: 9   GPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICGICS 68
           GP H       RL L +  E+++ A+  IG+ HRG E+L+E     +A    +++   C 
Sbjct: 14  GPQHPAAHGVLRLVLELSGEVIERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYACP 73

Query: 69  HIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSMRCF 128
                +    VE    I +P RA ++R +  E+ RL +H +        +G  T  +  F
Sbjct: 74  MNQEHAYVLAVEKLLGITVPPRAQYLRTLFNEVTRLINHIMNTTSMALDIGAMTPLLYGF 133

Query: 129 MLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISKYEEGLNKFL--- 185
             RE +++     SG+R+H +    GG+      +    P +L+ I K+ +   K+L   
Sbjct: 134 EEREHLLEFSERASGARMHAAWFRPGGV------ARDVPPDLLEDILKFCDSFPKYLDDV 187

Query: 186 ERMLNDPMIIS-RVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDFDE 244
           E +L++  I   R  D+G +  + A  +   GP  RG  V  D+RK      Y   DFD 
Sbjct: 188 EHLLDENRIFKQRTVDIGKVTAQQALDWGFTGPVLRGCGVPWDLRKSQPYDAYAAMDFDI 247

Query: 245 ILFDSGDVFARLAVRFYECLESVKIIRQALDALKD----TSDKRIYNPNYE--------- 291
               +GD + R  VR  E  +S++I+RQ ++ + D      D ++  P+           
Sbjct: 248 PTGANGDCYDRYLVRMAEQRQSIRIMRQCIEKMPDGPVKAVDHKVTPPSRGEMKSSMEAL 307

Query: 292 LHEFKPINCYTEAQRGEQY---------YSYGLDDEGLVR--QAKIRTPTATNLGAMEDI 340
           +H FK      +   GE Y         +   L  +G  R  + KIR+P   +L  ++ +
Sbjct: 308 IHHFKLFTEGFKVPEGETYTAVEAATGEFGVYLVSDGTNRPYRCKIRSPGYVHLQGLDLM 367

Query: 341 VKGYHVSDAELIIASCDPCFTCTDR 365
            +G+ ++D    I S D  F   DR
Sbjct: 368 SRGHMLADVVANIGSIDVVFGEIDR 392