Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 561 a.a., NADH-ubiquinone oxidoreductase (NCBI) from Rhodospirillum rubrum S1H

 Score =  184 bits (468), Expect = 4e-51
 Identities = 119/365 (32%), Positives = 183/365 (50%), Gaps = 6/365 (1%)

Query: 6   IAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEG-LPVEKACILCEKIC 64
           I++GP   T+ EP   RLF E E +  ++     +HRG+E+L +  L   +   + E++C
Sbjct: 177 ISVGPFFPTLDEPAYFRLFCEGEEIIGSDYRGFFSHRGIEKLSDTVLDYNQVPFMAERVC 236

Query: 65  GICSHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMS 124
           GIC  +H       VE    IEIP RA +IR I+ ELERLHSH L  G A   LG +T+ 
Sbjct: 237 GICGFVHSACYCMAVEDAAGIEIPPRAKYIRSIMMELERLHSHLLWLGLAGHYLGFDTVL 296

Query: 125 MRCFMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISKYEEGLNKF 184
           M+ + +REPIM +  EI+G+R  Y   ++GG+R   ++       I+  ++K      + 
Sbjct: 297 MQSWRIREPIMWLVEEITGNRKTYGMNLVGGVRR--DLDSAICDKIMAAVTKIGIECEEL 354

Query: 185 LERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDFDE 244
           +  +  D  +  R+  VGV+  + A     VGPTAR S V  D R       +   DF  
Sbjct: 355 ISAVAGDESLKMRMVKVGVLSHEDARGICVVGPTARASGVHIDARADYPYAAFPDLDFKP 414

Query: 245 ILFDSGDVFARLAVRFYECLESVKIIRQALDALKDTSDKRIYNPNYELHEFKPINCYTEA 304
              + GD++AR  VR  E   SV +I+Q +  L +      + P     E   I    EA
Sbjct: 415 SFHEGGDIWARTLVRVDEVRSSVDLIKQMITKLPEGEIMAGFGPIPAWREGYGI---AEA 471

Query: 305 QRGEQYYSYGLDDEGLVRQAKIRTPTATNLGAMEDIVKGYHVSDAELIIASCDPCFTCTD 364
            RGE  +      +    + ++R  T   L A+  ++KG  + D  +II S DPCF+CT+
Sbjct: 472 PRGECVHYVQTGKDNRPYRWRVRAATYPQLQAVPLMLKGMSIGDFPIIIGSIDPCFSCTE 531

Query: 365 RLMVL 369
           R++ +
Sbjct: 532 RVLTV 536