Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 599 a.a., NADH-quinone oxidoreductase subunit C/D from Rahnella sp. WP5

 Score = 91.7 bits (226), Expect = 5e-23
 Identities = 86/384 (22%), Positives = 161/384 (41%), Gaps = 29/384 (7%)

Query: 8   IGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICGIC 67
           +GP H +     R+ L ++ E + D    +G +HRG E++ E           ++I  + 
Sbjct: 219 LGPNHPSAHGAFRIILQLDGEEIVDCVPDVGYHHRGAEKMGERQSWHSYIPYTDRIEYLG 278

Query: 68  SHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSMRC 127
             ++       VE    I  P+R N IR+++ EL R++SH L      + +G  T     
Sbjct: 279 GCVNEMPYVLAVEKLAGIVTPDRVNTIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFA 338

Query: 128 FMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNIS-ETQIPHILDKISKYEEGLNKFLE 186
           F  R+ I  +   I+G R+H +   IGG+        E  +   LD +      L+ +++
Sbjct: 339 FTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPKGWERLLREFLDWM---PARLDSYVK 395

Query: 187 RMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDFDEIL 246
             L + ++I R K V   +   A  +   G   R + +  D+RKW     Y+ +DF+   
Sbjct: 396 AALKNTILIGRSKGVAAYNADDALAWGTTGAGLRATGIPFDVRKWRPYSGYENFDFEVPT 455

Query: 247 FDS-GDVFARLAVRFYECLESVKIIRQALDALKD---TSDKRIYNPNYELHEFKPINC-- 300
            D   D ++R+ ++  E  +S++I+ Q    + +    +D  +  P  +    + I    
Sbjct: 456 GDGVSDCYSRVMLKVEELRQSLRILEQCYKNMPEGPFKADHPLTTPPPKERTLQHIETLI 515

Query: 301 -------------------YTEAQRGEQYYSYGLDDEGLVRQAKIRTPTATNLGAMEDIV 341
                                EA +G   Y    D   +  + ++RTP+  +L  +  ++
Sbjct: 516 THFLQVSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPSFPHLQQIPSVI 575

Query: 342 KGYHVSDAELIIASCDPCFTCTDR 365
           +G  VSD  + + S D   +  DR
Sbjct: 576 RGSLVSDLIVYLGSIDFVMSDVDR 599