Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 404 a.a., NADH-quinone oxidoreductase subunit D from Phaeobacter inhibens DSM 17395

 Score =  104 bits (260), Expect = 4e-27
 Identities = 102/395 (25%), Positives = 168/395 (42%), Gaps = 47/395 (11%)

Query: 6   IAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICG 65
           I  GP H       RL L ++ EIV+  +  IG+ HRG E+LME     +     +++  
Sbjct: 22  INFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDY 81

Query: 66  IC--SHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETM 123
           +   +  H W  A  +E    +E+P RA+ IR++  E+ R+ +H L        +G  T 
Sbjct: 82  VAPMNQEHAWCLA--IEKLTGVEVPRRASLIRVLYSEIGRILNHLLNVTTQAMDVGALTP 139

Query: 124 SMRCFMLREPIMQVFFEISGSRVHYSCPIIGGIR---PRCNISETQ-----IPHILDKIS 175
            +  F  RE +M  +    G+R+H +    GG+    P   I + +      P ++D I 
Sbjct: 140 PLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPDALIDDIEAWTHTFPAVMDDI- 198

Query: 176 KYEEGLNKFLERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVP 235
              +GL      +  + +   R  D+GV+  +    +   G   RGS +  D+R+     
Sbjct: 199 ---DGL------LTENRIFKQRNADIGVVTEEDILNYGFSGVMVRGSGLAWDLRRSQPYE 249

Query: 236 EYDPYDFDEILFDSGDVFARLAVRFYECLESVKIIRQALDALKDTSDKRIYNPNYE---- 291
            YD +DF   +  +GD + R  VR  E  +S+ IIRQ +  L++T    +          
Sbjct: 250 CYDEFDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQCIGKLRETPGDILARGKLTPPKR 309

Query: 292 ----------LHEFK-----------PINCYTEAQRGEQYYSYGLDDEGLVRQAKIRTPT 330
                     +H FK            +    EA +GE       D      +AK+R P 
Sbjct: 310 GDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRAKLRAPG 369

Query: 331 ATNLGAMEDIVKGYHVSDAELIIASCDPCFTCTDR 365
             +L AM+ + KG+ ++D   II + D  F   DR
Sbjct: 370 FLHLQAMDYVAKGHQLADVAAIIGTMDVVFGEIDR 404