Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 417 a.a., NADH dehydrogenase I, D subunit from Dechlorosoma suillum PS

 Score =  109 bits (273), Expect = 1e-28
 Identities = 109/409 (26%), Positives = 183/409 (44%), Gaps = 55/409 (13%)

Query: 9   GPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKI--CGI 66
           GP H       RL L ++ E+V+ A+  IG+ HR  E+L E     ++    +++    +
Sbjct: 12  GPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAETRTWIQSVPYMDRLDYVSM 71

Query: 67  CSHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFG-HAFEILGHETMSM 125
            S+ H +  A  VE    IE+P RA +IR++ +E+ RL +H L  G H  ++ G   M +
Sbjct: 72  MSNEHAYCLA--VEKLLGIEVPVRAQYIRVMFDEITRLLNHLLWIGCHGLDV-GAMAMVL 128

Query: 126 RCFMLREPIMQVFFEISGSRVHYSCPIIGGI-------RPRCN------------ISETQ 166
             F  RE ++  +  +SG+R+H +    GG+        P+              ++E +
Sbjct: 129 YTFREREDLVDAYEAVSGARMHAAYYRPGGVYRDLPDRMPQYTENRFKSASTVKTLNENR 188

Query: 167 IPHILDKISKYEEGLNKFLER---MLNDPMIIS-RVKDVGVMDRKTAAKFHAVGPTARGS 222
              +LD +  +      +L+    +L D  I   R+ +VGV+  + A +    G   RGS
Sbjct: 189 TGSLLDFLEDFTNRFPTYLDEYHTLLTDNRIWKQRLVNVGVVSPERALQLGFTGAMLRGS 248

Query: 223 NVKSDMRKWGWVPEYDPYDFDEILFDSGDVFARLAVRFYECLESVKIIRQALDALKD--- 279
            +  D+RK      Y   DFD  +  +GD + R  VR  E  +S +II+Q +D L+    
Sbjct: 249 GIAWDLRKKQPYEVYADLDFDIPVGVNGDSYDRYLVRMEEMRQSNRIIKQCIDWLRKNPG 308

Query: 280 ---TSDKRIYNPNYE---------LHEFKPINCYTEAQRGEQYYS-------YGL----D 316
              T + ++  P  E         +H FK          GE Y +       +G+    D
Sbjct: 309 PVITDNHKVAPPAREGMKSNMEELIHHFKLFTEGIHVPEGEAYAAVEHPKGEFGIYFVSD 368

Query: 317 DEGLVRQAKIRTPTATNLGAMEDIVKGYHVSDAELIIASCDPCFTCTDR 365
                 + KIR P   +L AM+++ +G+ ++D   II S D  F   DR
Sbjct: 369 GANKPYRMKIRAPGYAHLAAMDEMARGHMIADVVTIIGSQDIVFGEIDR 417