Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 440 a.a., Probable NADH dehydrogenase I (chain D) NuoD (NADH-ubiquinone oxidoreductase chain D) from Mycobacterium tuberculosis H37Rv

 Score =  105 bits (261), Expect = 3e-27
 Identities = 102/402 (25%), Positives = 166/402 (41%), Gaps = 44/402 (10%)

Query: 6   IAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICG 65
           + +GP H +     RL L IE E V +A   IG  H G+E+ +E     +      ++  
Sbjct: 41  VNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDY 100

Query: 66  ICSHIHLWSAARLVE--IGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETM 123
           +    +  +    VE  +G   EIPER N IR+++ EL R+ SH +        LG  T 
Sbjct: 101 LSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTP 160

Query: 124 SMRCFMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISKYEEGLNK 183
               F  RE ++ +F +I+G R++ +    GG+    ++       I + + +  + L +
Sbjct: 161 MFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQ--DLPPNAATEIAEALKQLRQPLRE 218

Query: 184 FLERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDFD 243
             E +  + +  +R + VG +D          GP  R + +  D+RK      Y  Y+FD
Sbjct: 219 MGELLNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFD 278

Query: 244 EILFDSGDVFARLAVRFYECLESVKIIRQALDALKD----TSDKRIYNP----------- 288
            I  DS D + R  +R  E  ES+KI+ Q LD L+      SD+++  P           
Sbjct: 279 VITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPDGLG 338

Query: 289 --------------NYELHEFK-----------PINCYTEAQRGEQYYSYGLDDEGLVRQ 323
                            +H FK            +    E+ RGE       D      +
Sbjct: 339 NSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYR 398

Query: 324 AKIRTPTATNLGAMEDIVKGYHVSDAELIIASCDPCFTCTDR 365
              R P+ TNL ++  + +G  V+D    +AS DP     DR
Sbjct: 399 VHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDPVMGGVDR 440