Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 414 a.a., coenzyme F420 hydrogenase subunit alpha from Methanococcus maripaludis JJ

 Score = 60.1 bits (144), Expect = 1e-13
 Identities = 98/414 (23%), Positives = 162/414 (39%), Gaps = 55/414 (13%)

Query: 6   IAIGPVHSTMLEPH-RLRLFIEDE-IVKDAELTIGVNHRGVERLMEGLPVEKACILCEKI 63
           + I P  +T  E H +L L ++DE IV  A        RG E +++G       I   +I
Sbjct: 5   VTISP--TTRHEGHAKLVLNVDDEGIVTKAFYPNTTPVRGFETMLQGKTAAFGPIAVMRI 62

Query: 64  CGICSHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILG---- 119
           CGIC   H  ++   +E   ++EIP+    +R ++    R+HSH L   H   I+     
Sbjct: 63  CGICQATHGIASCEAIENAIDMEIPKDGMILRELLGLGNRMHSHPL---HHLLIVDDFLK 119

Query: 120 -HETMSMR------CFMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILD 172
             E  ++R         +R+    V     G  +H    ++GG+  R NI+E     +  
Sbjct: 120 PEEAGTLRVEGIKLIQRMRKAGQMVVDITGGEGIHPPNLMVGGM--RTNITERAKSKLYY 177

Query: 173 KISKYEEGLNKFLERMLNDPMIISRVKD-VGVMDRKTAAKFHAVGPTARGSNVKSDMRKW 231
              +YE+  N  LE +    M++ R  D +G+ D       +    +  G+    + +  
Sbjct: 178 ACREYEKDCNAMLEVL---EMLMERYLDEIGIPDLGKHNLPYIATDSTFGNRDAINWKDV 234

Query: 232 GWVPEYDPY-DFDEILFDS-------------GDVFARL----------------AVRFY 261
             VP    Y DF +I   +             G   AR+                  R  
Sbjct: 235 TEVPAQRYYADFPDIAQTATNQIPFYRGNPAEGGPRARMIKYGNFKPAGGAMDLNLARAM 294

Query: 262 ECLESVKIIRQALDALKDTSDKRIYNPNYELHEFKPINCYTEAQRGEQYYSYGLDDEGLV 321
           E  E+VK   + +D L      R     Y   E   I  + EA R    +   +  +G +
Sbjct: 295 ENFEAVKRSLELIDELNINGTVREVPNFYNAKEEFGIGVH-EAPRATNTHMAKMGKDGRI 353

Query: 322 RQAKIRTPTATNLGAMEDIVKGYHVSDAELIIASCDPCFTCTDRLMVLKEPFKK 375
            +  I   +  N  A+E  ++GYH   AE+I+ + D   +C   ++V  E  KK
Sbjct: 354 EKYNIIAASTWNFPAVEKAIEGYHHKYAEVIMRAYDIUASCATHVIVKDEQTKK 407