Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis JJ

 Score =  228 bits (580), Expect = 3e-64
 Identities = 137/368 (37%), Positives = 209/368 (56%), Gaps = 9/368 (2%)

Query: 6   IAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICG 65
           + IGP+H  + EP R++L +E E VK AE+ +G  HRG+ER+MEG    K   L E++CG
Sbjct: 4   VPIGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVCG 63

Query: 66  ICSHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSM 125
           ICS+IH  S A  +E  C+IE+PE+A ++R+I  ELER+HSH +        + HET+ +
Sbjct: 64  ICSYIHTQSFAECIENMCDIEVPEKAKYLRVITCELERIHSHLIAAAVYNLTIEHETLGI 123

Query: 126 RCFMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISKYEEGLNKFL 185
               +RE IM +   I+G+RV+    ++GG+  R ++++  +  I  KI ++EE +   +
Sbjct: 124 WMLNVRESIMDLLELITGNRVNMGFNVVGGV--RLDLNKEILDKIHKKIDEFEEDVKNII 181

Query: 186 ERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNV-KSDMRKWGWVPEYDPYDFDE 244
           E     P+I  R K +G +  K   K  A GP AR S + +SD R       Y   +F  
Sbjct: 182 EVFETGPLIGMRSKHIGKIGYKEIMKTRAAGPVARASGIPESDWRLRH--ETYKALNFKP 239

Query: 245 ILFDSGDVFARLAVRFYECLESVKIIRQALDALKDTSDKRIYNPNYELHEFKPINCYTEA 304
              + GD +AR+ VR  E L SV++IR+AL+   ++S   I     E+   +    Y EA
Sbjct: 240 DWRNEGDNYARMMVRHDEVLTSVELIRRALEHYAESSG--IVRNKAEIRATEG-EWYNEA 296

Query: 305 QRGEQYYSYGLDDEGLVRQAKIRTPTATNLGAMEDIVKGY-HVSDAELIIASCDPCFTCT 363
            RGE YY   + D GL+++  IRTPT  NL A + ++K    ++DA     S DPC +CT
Sbjct: 297 HRGEVYYKIAITDGGLIKRIIIRTPTVMNLEAYKYMIKDCPTIADAVATYTSIDPCVSCT 356

Query: 364 DRLMVLKE 371
           +R + LK+
Sbjct: 357 ERTIQLKD 364