Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 418 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis JJ

 Score = 50.4 bits (119), Expect = 9e-11
 Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 31/226 (13%)

Query: 4   GEIAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNH-RGVERLMEGLPVEKACILCEK 62
           G++ I P+  + LE H       D+  K  ++ + +   RG E+ + G P E+   +  +
Sbjct: 2   GKVTIEPL--SRLEGHGKVSITLDDAGKPTDVKLHITALRGFEQFVVGRPAEEVPRIVPR 59

Query: 63  ICGICSHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFE---ILG 119
           ICGIC   H  ++ + V+     E+P  A  +R ++     +HSH L F +      +LG
Sbjct: 60  ICGICQTPHHLASVKAVDAAWGAEVPSAAEKLRELMHLGNMMHSHALHFYYLAAPDFVLG 119

Query: 120 HET----------------MSMRCFMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNIS 163
            ++                ++ +   +R     +   I G  +H    + GG+     +S
Sbjct: 120 PDSDPAARNIIGVIGAAPEVAKKAIAMRRVGQSIVETIGGRAIHPVTGVPGGVSKA--LS 177

Query: 164 ETQIPHILDKISKY----EEGLNKFLERMLNDPMIISRVKDVGVMD 205
           E +   +L +I +     ++G+   L + LN+   +  VK +GV+D
Sbjct: 178 EEKRDELLKEIDEMIAYGQDGI--ALIKSLNE-KYMDVVKSLGVID 220



 Score = 28.1 bits (61), Expect = 5e-04
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 304 AQRGEQYYSYGLDDEGLVRQAKIRTPTATNLGAMEDIVK 342
           A RG  +++Y  DD+G+V +A +   +  N+  ME  ++
Sbjct: 372 APRGTLFHNYETDDKGIVVKANMIVASTHNVPTMEKAIQ 410