Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 601 a.a., NADH dehydrogenase I, C/D subunits (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 99.0 bits (245), Expect = 3e-25
 Identities = 87/388 (22%), Positives = 165/388 (42%), Gaps = 37/388 (9%)

Query: 8   IGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICGIC 67
           +GP H +     RL L ++ E V++    IG +HRG E++ E           +++  + 
Sbjct: 221 LGPNHPSAHGAFRLVLQLDGEEVRNCVPDIGYHHRGAEKMGERQSWHSYIPYTDRVEYLG 280

Query: 68  SHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSMRC 127
             ++       VE    I++P+R + IR+++ EL R+ SH L  G   + +G  T     
Sbjct: 281 GVMNNLPYVLAVEKLAGIKVPQRVDMIRVMMAELFRIQSHLLFLGTYIQDVGAMTPVFFT 340

Query: 128 FMLREPIMQVFFEISGSRVHYSCPIIGGIRP------RCNISETQIPHILDKISKYEEGL 181
           F  R+ I  +   I+G+R+H +   IGG+        +  + +  +  +  ++  YE+  
Sbjct: 341 FTDRQHIYTIIEAITGARMHPAWFRIGGVAHDLPKGWQRLVQDNLLSWLPKRLMDYEKA- 399

Query: 182 NKFLERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYD 241
                  + + ++  R   V     + A  +   G   R + +  D+RKW     Y+ +D
Sbjct: 400 ------AMRNSILRGRTIGVAAYTTEQALAWGTTGAGLRATGLNFDVRKWRPYSGYEQFD 453

Query: 242 FDEILFDSGDVFARLAVRFYECLESVKIIRQALDALKD---TSDKRIYNPNYELHEFKPI 298
           F+  +  +GD + R  VR  E  +S++II Q ++ + +    +D  +  P  +    + I
Sbjct: 454 FEVPVGSNGDAYDRATVRIEEIRQSMRIIEQCMNNMPEGPFKADHPLTTPPPKERTLQHI 513

Query: 299 NC---------------------YTEAQRGEQYYSYGLDDEGLVRQAKIRTPTATNLGAM 337
                                    EA +G   Y    D   +  + +IRTP+  +L  +
Sbjct: 514 ETLINHFLQVSWGPVMPAAESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQI 573

Query: 338 EDIVKGYHVSDAELIIASCDPCFTCTDR 365
             ++KG  VSD  + + S D   +  DR
Sbjct: 574 PSVIKGSMVSDLIVYLGSIDFVMSDVDR 601