Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 358 a.a., Ech hydrogenase, subunit EchE, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  204 bits (518), Expect = 4e-57
 Identities = 130/363 (35%), Positives = 192/363 (52%), Gaps = 13/363 (3%)

Query: 6   IAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICG 65
           I  GP H  + EP  L+L +EDE V +A   +G  HRG+E L       +   + E++CG
Sbjct: 6   IPFGPQHPVLPEPLHLKLVVEDETVVEAIPALGYVHRGLETLASIRDYNQMVYVVERVCG 65

Query: 66  ICSHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSM 125
           ICS IH     + +E   N+E+P RA  +R I  EL R+HSH L  G   +  G E++ M
Sbjct: 66  ICSCIHAMCYCQSLECMMNVEVPRRAKVLRTIWSELHRIHSHLLWLGLFADGFGFESLFM 125

Query: 126 RCFMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISKYEEGLNKFL 185
           + + +RE +M +    +G+RV  S  I+GG+R   ++S      ILD+++  E  +   +
Sbjct: 126 QFWKVRERVMDINEATAGNRVVISTNIVGGVRR--DLSPEHQKWILDEMNHLEREIRALM 183

Query: 186 ERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDFDEI 245
             +L+D  +  R K VGV+  + A +  AVGP  RGS V  D R+  +   +D  DF+ I
Sbjct: 184 TTILDDYTVCKRTKGVGVLTAQQAIQLGAVGPMLRGSGVAQDARQLQYA-AFDELDFEPI 242

Query: 246 LFDSGDVFARLAVRFYECLESVKIIRQALDALKDT--SDKRIYNPNYELHEFKPINCYTE 303
               GD +AR  VRF E L+SV ++RQA+  L DT  S K    P  E      +    E
Sbjct: 243 AVPDGDSWARCKVRFLEVLQSVDLVRQAISKLPDTELSVKVPGKPEGE------VVARVE 296

Query: 304 AQRGE-QYYSYGLDDEGLVRQAKIRTPTATNLGAMEDIVKGYHVSDAELIIASCDPCFTC 362
             RGE  YY  G   + L R  +IRTPT  N+  +  I+ G  ++D  + + S DPC +C
Sbjct: 297 QPRGELMYYVKGNGSKHLER-VRIRTPTFANIPPLLAIMGGLQLADVPVAVLSIDPCISC 355

Query: 363 TDR 365
           T+R
Sbjct: 356 TER 358