Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 566 a.a., periplasmic [NiFe] hydrogenase, large subunit, isozyme 1 (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 58.2 bits (139), Expect = 6e-13
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 4/113 (3%)

Query: 2   YEGEIAIGPVHSTMLEPH-RLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILC 60
           Y G I I PV  T +E H R+ + +E+  VK A  +     RG+E +++G     A    
Sbjct: 20  YTGPITIDPV--TRIEGHLRIEVEVENGKVKRA-YSSSTLFRGLEIILKGRDPRDAQHFT 76

Query: 61  EKICGICSHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGH 113
           ++ CG+C++ H  ++ R V+    + IP+ A +IR +V   + LH H + F H
Sbjct: 77  QRTCGVCTYTHALASTRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYH 129