Pairwise Alignments

Query, 122 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 393 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis JJ

 Score = 50.1 bits (118), Expect = 3e-11
 Identities = 26/84 (30%), Positives = 52/84 (61%), Gaps = 8/84 (9%)

Query: 31  GILQYDDGNYTESIDLFEKAIQLNPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 90
           G+ Q+D     E+++++EK ++++P +++ W   G A Y +++YE+A+  Y+  +N  + 
Sbjct: 157 GLKQFD-----EALEIYEKVLKISPYDTEVWKNIGNAFYTVKKYEKAIQFYDMYLNEHKG 211

Query: 91  EYNKDVWAAKADALRHIEGKEVEA 114
           ++   V  +K DALR + GK  EA
Sbjct: 212 DFG--VTLSKGDALRKL-GKTNEA 232



 Score = 47.0 bits (110), Expect = 3e-10
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 39  NYTESIDLFEKAIQLNPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE 91
           NY + ++  EKA+  + E +K W  KG  L  LER+ EA+DCY   I++ +++
Sbjct: 296 NYNKGLEFMEKALDKDSEYAKAWCYKGYILNLLERHYEAIDCYKKAISINKND 348



 Score = 40.0 bits (92), Expect = 3e-08
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 22 QNPEEYYSKGILQYDDGNYTESIDLFEKAIQLNPEESKYWLMKGKALYNLERYEEAVDCY 81
          ++P++    G   Y++G Y +SI+ F K +   P+    W  KG A   L + + A D Y
Sbjct: 10 KDPKKLLEIGTEYYNNGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYQMLGKSKLAQDSY 69

Query: 82 NYVINV 87
             +++
Sbjct: 70 EKALSI 75



 Score = 38.1 bits (87), Expect = 1e-07
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 8/63 (12%)

Query: 28  YSKGILQYDDGNYTESIDLFEKAIQLNPEESKYWL-------MKGKALYNLERYEEAVDC 80
           Y   IL   + +Y E+ID ++KAI +N  +SK+W+         GK  Y+ E YE AV+ 
Sbjct: 320 YKGYILNLLERHY-EAIDCYKKAISINKNDSKFWMHLSNVYKTIGKEDYSKEAYENAVNL 378

Query: 81  YNY 83
            N+
Sbjct: 379 ENH 381



 Score = 30.4 bits (67), Expect = 3e-05
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 22  QNPEEYYSKGILQYDDGNYTESIDLFEKAIQLNPEESKYWLMKGKALYNLERYEEAVDCY 81
           +NP+ +Y KG      G    + D +EKA+ + P + +        L +LE ++E+V+  
Sbjct: 44  KNPDAWYFKGNAYQMLGKSKLAQDSYEKALSIRPNDLEIIKSYTMLLNSLELFKESVEIL 103

Query: 82  -------NYVINVIEDEYNK 94
                  + +I ++ D Y K
Sbjct: 104 KNVSESDDEIIEILGDAYLK 123



 Score = 30.0 bits (66), Expect = 3e-05
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 29  SKGILQYDDGNYTESIDLFEKAIQLNPEESKYWLMKGKALYNLERYEEAV 78
           SKG      G   E++DL+ K ++ + +  + W   G   Y+ E YE A+
Sbjct: 218 SKGDALRKLGKTNEALDLYTKVLEKHIQNYEPWCRVGLLYYDTEDYETAI 267