Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 1427 a.a., Lhr-like helicases from Pseudomonas fluorescens FW300-N2E2

 Score =  365 bits (937), Expect = e-104
 Identities = 268/847 (31%), Positives = 427/847 (50%), Gaps = 46/847 (5%)

Query: 16  TPPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEG-LQNSIYCLYISP 74
           T  Q  A P I   R+TL+ +PTGSGKTL++F+A++++L     E+G L +    +Y+SP
Sbjct: 20  TAAQAQAWPLIGQRRSTLVAAPTGSGKTLTAFLAVLDDLVHRGLEQGGLPDQTLVVYVSP 79

Query: 75  LKSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNT 134
           LK+L+NDI +NL  PL  I E L+        I  A+R GDT   E+S M K  PHIL T
Sbjct: 80  LKALSNDIQINLQNPLAGITEQLRRMDLPPLHITTAVRTGDTPQKERSAMRKTAPHILVT 139

Query: 135 TPETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFLRIG 194
           TPE+L ++L S   ++ L + + VI+DEIHA+A +KRG HL++SLERL+ L  +  +RIG
Sbjct: 140 TPESLYVLLGSDSGRQMLASTRTVIVDEIHAIAASKRGSHLALSLERLQALCAEPLMRIG 199

Query: 195 CSATVEPLEMVADYLGGYYDDGYKRPVEIVDTRFVRGYDLKLLCPVDDLINKTPKEISEK 254
            SAT +P+E V+ +L G   +G  R  EIVD    R  DL +  P   L      ++ E 
Sbjct: 200 LSATQKPIEAVSRFLVG---EG--RSCEIVDIGHARPRDLDIEVPPVPLSAVMANDVWEL 254

Query: 255 LYEKLDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSLSKEKRLEL 314
           +Y +L  L + H  TL+F NTR  AER    L +   E+  +     HHGSL+KE RL+ 
Sbjct: 255 VYNRLAELAREHRTTLVFVNTRRLAER----LSRHLSERLGKDAVAAHHGSLAKEFRLDA 310

Query: 315 EEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAGHGIGKVAKGR 374
           E++LK G LK    ++SLELGID+  +DLV QI SP+S+   LQR+GR+GH +G   KGR
Sbjct: 311 EQRLKRGELKVLIATASLELGIDIGDVDLVCQIASPRSISAFLQRVGRSGHQVGGTPKGR 370

Query: 375 IIALDRDELLECAVMLKKAMDGFIDKVHIPKGPLDVLIQHIYGIAINGYIELERVKNIVR 434
           + A  RD+L+ECA +L     G +D +HIPK PLDVL Q I           + +    R
Sbjct: 371 LFATTRDDLIECAALLDCVRRGELDILHIPKAPLDVLAQQIVAEVSCQEWPEQALLETFR 430

Query: 435 RSYNYHDITDEDFKILINYMTASYAGMDEKRIYSKIWYDPDTQMI-GKTGKTARAIYYMN 493
           R+  Y ++ +  ++ L+  +     G    R  + +  D  T+ + G+ G    A+   +
Sbjct: 431 RASPYAELDEGHYQALLQMLAEGLNGRQGVR-SAYLHRDAVTRTLRGRRGSKLTAV--TS 487

Query: 494 IGTIPDDFSCDVYLRGTTIWIGKLDEQYLDRLEKGDVFTLGGEHLKFQYRRGSKVYV-DK 552
            GTIPD+    V L    + IG ++E +      GDVF LG    +       +V V D 
Sbjct: 488 GGTIPDNADYSVLLEPQGLNIGSVNEDFAVESIAGDVFQLGNTSYRIIRVETGRVRVEDA 547

Query: 553 TSERPNIPSWYSERLPLSYDLGRNILLFKKE-----AVSKYNAGRLLD-LLSEYPLDSNA 606
             + P IP W  E    S +L   +   + +       +  N    LD L     L+  +
Sbjct: 548 QGQPPTIPFWLGEAPGRSAELSLAVARLQAQLDHLLGATPGNLQPALDWLTGTLQLNLAS 607

Query: 607 TKSLYGLFNEQILYKGNDSVSTLNKMVVEGHIFDKK--MHYYFHSNYGRKFNDGFSRAVA 664
            + L        L  G  ++ + + +++E   FD+        H+ +G + N  +  A+ 
Sbjct: 608 AEQLVDYLAPARLAFG--ALPSQDTLLME-RFFDESGGTQLIIHTPFGSRINRAWGLALR 664

Query: 665 YALSKQYKLGVLVSISDTGFSLEFAKNQKVDIESAIRSLTPENIKDVLKQALEGTNLLKR 724
               + +   +  + S+    L  + +   +++   R L   + + +L QA+    L   
Sbjct: 665 KRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSHSAEQILVQAVLDAPLFGV 724

Query: 725 MFRINATRSLMILRNYIGHKKSA------KKQQVSADILISYAKSLDRFA--------PL 770
            +R NA  +L + R Y G +K A      K + + A +       L+  A        PL
Sbjct: 725 RWRWNAGVALALPR-YAGGRKVAPQIQRMKSEDLIASVFPDQIACLENLAGEREIPDHPL 783

Query: 771 -EETLREIIEDSLELDNIREVLGEIRSGKLKINVIDVPIPTPMSFGIATLT----ASDSV 825
            E+TL + + ++++ +    +L  + +G++++   D+P P+P++  I +        D+ 
Sbjct: 784 VEQTLDDCLHEAMDSEGWLTLLRRMEAGQIRLISRDLPAPSPLAAEILSARPYTFLDDAP 843

Query: 826 LAENKNQ 832
           L E + Q
Sbjct: 844 LEERRTQ 850