Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 739 a.a., Lhr-like helicases from Pseudomonas stutzeri RCH2

 Score =  137 bits (345), Expect = 2e-36
 Identities = 123/429 (28%), Positives = 202/429 (47%), Gaps = 55/429 (12%)

Query: 19  QRLAIPKI-HFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNSIYCLYISPLKS 77
           Q  AIP +    ++ +I + T +GKT ++F+ I+  L +  ++ G       LYISPLK+
Sbjct: 36  QERAIPALLGADQDVIIAAATAAGKTEAAFLPILTNLLQDTEKPGA-----VLYISPLKA 90

Query: 78  LANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNTTPE 137
           L ND    L     E++            +     HGD S   K + LK    IL  TPE
Sbjct: 91  LINDQWDRLARLCDELE------------LPVIAWHGDISASRKHRFLKSPEGILLITPE 138

Query: 138 TL-AIILNSPKFKEKL-KTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFLRIGC 195
           +L A+ +N       L   ++++++DE+HA   ++RG  L   + R+  + ++   R+G 
Sbjct: 139 SLEALFVNKGTSLAGLFANLRYLVVDELHAFIGSERGKQLQSLMHRVETIIDRPLPRVGL 198

Query: 196 SATVEPLEMVADYLGGYYDDGYKRPVEIVDTRF--------VRGY-DLKLLCPVD---DL 243
           SAT+  + + A +L           V +++++         +RGY + K   PV    D 
Sbjct: 199 SATLGDMTLAAAFLR----PNAPHHVSVIESKGSGQILKAQIRGYVESKKALPVQPEGDD 254

Query: 244 INKTPKEISEKLYEKLDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHH 303
           +      I+E L++ L        N LIF N+R   E    NLR+R  +         HH
Sbjct: 255 VFSPDHAIAEHLFQVL-----RGSNNLIFPNSRTQVEWFADNLRRRCEQNGVPNEFWPHH 309

Query: 304 GSLSKEKRLELEEKLKSGNLKF-ATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGR 362
           GSL+K+ R E E+ LK+G+    A  +++LELG+D+  I  VVQIG+P SV ++ QR+GR
Sbjct: 310 GSLAKDIREETEKALKAGDRPATAVCTTTLELGVDIGSIKTVVQIGAPPSVASLRQRLGR 369

Query: 363 AGHGIGKVAKGRIIALD-------------RDELLECAVMLKKAMDGFIDKVHIPKGPLD 409
           +G   G+ A  R    +             R  LL+   M++  M G+ +   +    L 
Sbjct: 370 SGRRPGEAAILRSYCKERQLDDGSPLSDRLRQGLLQSIAMIRLLMQGWFEPPRVHGLHLS 429

Query: 410 VLIQHIYGI 418
            L+Q    +
Sbjct: 430 TLVQQCLSV 438