Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 1475 a.a., Lhr-like helicases from Pseudomonas stutzeri RCH2

 Score =  375 bits (962), Expect = e-107
 Identities = 273/841 (32%), Positives = 428/841 (50%), Gaps = 53/841 (6%)

Query: 16  TPPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEG-LQNSIYCLYISP 74
           TP Q  A P I  GR+TL+ +PTGSGKTL++F+A I+ L +    EG L ++   LY+SP
Sbjct: 51  TPAQAAAWPLIRAGRSTLVAAPTGSGKTLTAFLAAIDGLVQQGLAEGGLADATRVLYVSP 110

Query: 75  LKSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNT 134
           LK+L+NDIH+NL+EPL  I   L   G     IR A+R GDT   E++ M K+ PHIL T
Sbjct: 111 LKALSNDIHINLEEPLAGITAELARLGLPPLEIRTAVRTGDTPQAERNAMRKRVPHILVT 170

Query: 135 TPETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFLRIG 194
           TPE+L ++L+S   +E L  VQ VI+DEIHA+A NKRG HL++SLERL  L N+  +R+G
Sbjct: 171 TPESLYVLLSSASGREMLADVQSVIVDEIHAIAGNKRGSHLALSLERLEALCNRPLVRVG 230

Query: 195 CSATVEPLEMVADYLGGYYDDGYKRPVEIVDTRFVRGYDLKLLCPVDDLINKTPKEISEK 254
            SAT +P++ VA +L      G +RP EIVD    R  DL L  P   L      +    
Sbjct: 231 LSATQKPIDAVARFLA-----GVERPCEIVDIGHGRARDLALEVPSVPLEAVMSNDAWAL 285

Query: 255 LYEKLDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSLSKEKRLEL 314
           +Y++L  L   H  TL+F NTR  AER   +L +R   +        HHGSL++E+RL  
Sbjct: 286 VYDRLAALAGEHRTTLVFVNTRRMAERTTRHLAERLGAEV----VAAHHGSLAREQRLSA 341

Query: 315 EEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAGHGIGKVAKGR 374
           E+KLK G L+    ++SLELGID+  ++LV Q+GSP+S+   LQR+GRAGH +  V+KGR
Sbjct: 342 EQKLKRGELRVLVATASLELGIDIGDVELVCQLGSPRSISAFLQRVGRAGHQVAGVSKGR 401

Query: 375 IIALDRDELLECAVMLKKAMDGFIDKVHIPKGPLDVLIQHIYGIAINGYIELERVKNIVR 434
           +    RD+L+ECA +      G +D + IP+ PLDVL Q I         E   +  ++R
Sbjct: 402 LFPGSRDDLIECAALFDAVRRGELDTLKIPQAPLDVLAQQIVAEVACREWEEGALLQLLR 461

Query: 435 RSYNYHDITDEDFKILINYMTASYAGMDEKRIYSKIWYDPDTQMI-GKTGKTARAIYYMN 493
           R+  Y  + +  F+ L+  +   Y      R  + +  D  T+ + G+ G    A+   +
Sbjct: 462 RAMPYAALDEATFQALLRMLAEGYTTRHGTR-GAYLHRDLATRSLRGRRGGRLTAL--TS 518

Query: 494 IGTIPDDFSCDVYLRGTTIWIGKLDEQYLDRLEKGDVFTLGGEHLKFQYRRGSKVYV-DK 552
            GTI D+    V L    + IG ++E +      GDVF LG    +       +V V D 
Sbjct: 519 GGTIADNADYAVLLEPQGLNIGTVNEDFAIESLAGDVFQLGNTSYRILKIESGRVRVEDA 578

Query: 553 TSERPNIPSWYSERLPLSYDLGRNILLFKKEAVSK-YNAGRLLDLLSEYP-LDSNATKSL 610
               P+IP W  E    S +L   +   + E   + ++A    D  ++ P + S+A+  L
Sbjct: 579 QGMPPSIPFWLGEAPGRSDELSFAVARLRDEIDRRLHDAATAADDAAKSPGVVSSASSRL 638

Query: 611 ----------YGLFNE------QILYKGNDSVSTL--NKMVVEGHIFDKK--MHYYFHSN 650
                      GL ++      + L +   ++  L   + +V    FD+        HS 
Sbjct: 639 APAIDWLTGSLGLSDDAARQIVEYLARARSALGALPTQQRLVMERFFDEPGGTQLVIHSP 698

Query: 651 YGRKFNDGFSRAVAYALSKQYKLGVLVSISDTGFSLEFAKNQKVDIESAIRSLTPENIKD 710
           YG + N  +  A+     + +   +  + ++    L  + +    +    R L   + + 
Sbjct: 699 YGSRINRAWGLALRKRFCRTFNFELQAAATEDAIILSLSTSHSFPLADVWRYLHSASAEQ 758

Query: 711 VLKQALEGTNLLKRMFRINATRSLMILRNYIGHKKSAKKQQVSADILISYAKSLDRFAPL 770
           VL QAL    L    +R  AT +L + R   G K + + Q++ ++ L++     D+ A L
Sbjct: 759 VLIQALLDAPLFGVRWRWIATTALALPRMAGGRKVAPQLQRMKSEDLLATVFP-DQVACL 817

Query: 771 E---------------ETLREIIEDSLELDNIREVLGEIRSGKLKINVIDVPIPTPMSFG 815
           E               +TL + + ++++ +    +L  +  G++++   D+P P+P++  
Sbjct: 818 ENIVGEREIPDHPLVRQTLDDCLHEAMDSEGWLALLRRMERGEIELLARDLPAPSPLAME 877

Query: 816 I 816
           I
Sbjct: 878 I 878