Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 863 a.a., Lhr-like helicases from Pseudomonas stutzeri RCH2

 Score =  240 bits (612), Expect = 3e-67
 Identities = 223/849 (26%), Positives = 393/849 (46%), Gaps = 75/849 (8%)

Query: 17  PPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNS---IYCLYIS 73
           P QR     I  G + L+ + TGSGKT + ++  +N            +    +  L+I+
Sbjct: 22  PFQREVWQAIDRGESGLLHATTGSGKTYAVWLGALNRFATKAPRPNTTDKPAPLTVLWIT 81

Query: 74  PLKSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAI--RHGDTSNYEKSKMLKKTPHI 131
           P+++LA D    L  PL ++            GI  +I  R GDTS  E+++  ++ P  
Sbjct: 82  PMRALAADTARALQAPLYDL------------GINWSIGLRTGDTSGAERARQGRRLPSA 129

Query: 132 LNTTPETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFL 191
           L TTPE+L ++L     ++    ++ +++DE H L  NKRGV L ++L RLR+    E +
Sbjct: 130 LVTTPESLTLLLTRADARQAFAGLRMLVVDEWHELLGNKRGVQLQLALARLRQWM-PELI 188

Query: 192 RIGCSATVEPLEMVADYLGGYYDDGYKRPVEIVDTRFVRGY---DLKLLCPVDDLINKTP 248
             G SAT+       D L  Y   G          R V+G    DL++   +   I + P
Sbjct: 189 VWGLSATLGNQPHALDVLL-YPGSG----------RLVQGKVDKDLRVDTLLPPCIERFP 237

Query: 249 --KEISEKLYEKLDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSL 306
               +  ++  ++   I +   TL+FTNTR  +E     L    P+         HHGSL
Sbjct: 238 WAGHLGLRMLPQVVEEIDSAATTLVFTNTRSQSEIWYQALLDARPDWAGLI--ALHHGSL 295

Query: 307 SKEKRLELEEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAGHG 366
           ++E R  +E+ LK G LK    +SSL+LG+D   ++ V+QIGSPK V  ++QR GR+GH 
Sbjct: 296 AREVRDWVEQGLKQGALKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLMQRAGRSGHA 355

Query: 367 IGKVAKGRIIALDRDELLECAVMLKKAMDGFIDKVHIPKGPLDVLIQHIYGIAINGYIEL 426
            G+ ++  ++     E++E A       +  I+    P  PLDVL+QH+  +A+ G    
Sbjct: 356 PGRTSRVTLVPTHSVEVVEAAAAQVAIGERRIEARSAPHRPLDVLVQHLVSMALGGGFRP 415

Query: 427 ERVKNIVRRSYNYHDITDEDFKILINYMTASYAGMDEKRIYSKIWYDPDTQMIGKTGKTA 486
           + +   VR++++Y D+ ++ ++  + ++      +     Y ++  +PD   + K     
Sbjct: 416 DELFAEVRQAWSYRDLNEDHWQWALAFVRHGGHSLTAYPDYQRV--EPDEAGLWKVPSRR 473

Query: 487 RAI-YYMNIGTIPDDFSCDVYL---RGTTIWIGKLDEQYLDRLEKGDVFTLGGEHLKFQY 542
            A+ + M+IGTI  D S  V      G+   +G ++E ++ RL  GD F  GG  L+   
Sbjct: 474 VALRHRMSIGTIVSDASLSVKFWAKGGSGRSLGTIEEGFIARLRPGDNFLFGGRLLELVR 533

Query: 543 RRGSKVYVDK-TSERPNIPSWYSERLPLSYDLGRNILLFKKEAVSKYNAGRLLDLLSEYP 601
                 YV + T  +  +P W   R+PLS +L   ++               L   S   
Sbjct: 534 VENMTAYVSRATGRKAAVPRWNGGRMPLSSELADAVV-------------EQLGAASRGH 580

Query: 602 LDSNATKSLYGLFNEQILYKGNDSVSTLNKMVVEGHIFDKKMHYYFHSNYGRKFNDGFSR 661
            +S     +  L   Q+ +    + +TL   V++     +  H + +   GR  + G + 
Sbjct: 581 FESPEMGLVEPLLRVQMDWSALPTETTLLAEVMKSR---EGWHLFLYPFAGRHVHLGLAS 637

Query: 662 AVAYALSKQYKLGVLVSISDTGFSLEFAKNQKVDIESAIRSLTPE-----NIKDVLKQAL 716
            +A+ L +   L   ++++D GF L  A   +VD    +  LTPE     N+   +  +L
Sbjct: 638 LLAWRLGQHRPLTFSIAVNDYGFELLSA--TEVD---WMHWLTPELFSEDNLLHDVLASL 692

Query: 717 EGTNLLKRMFRINATRSLMILRNYIGHKKSAKKQQVSADILISYAKSLD-RFAPLEETLR 775
               L +R FR  A  + ++   Y G +KSA++ Q S+ +     +  D     L +   
Sbjct: 693 NAGELARRRFREIARIAGLVFSGYPGAQKSARQLQASSGLFFDVFRQYDPANLLLTQAEE 752

Query: 776 EIIEDSLELDNIREVLGEIRSGKLKINVIDVPIPTPMSFGIATLTASDSVLAENKNQLLK 835
           E++   LE++ +++ L  ++  +L I+   V   TP++F +      +S+ +E   +L  
Sbjct: 753 EVLRQELEVERLQQTLQRLQQRQLDIH--QVKRTTPLAFPLMVERFRESMSSE---KLAD 807

Query: 836 EFHQMVIKM 844
              +MV ++
Sbjct: 808 RIRRMVAEL 816