Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 443 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score = 72.4 bits (176), Expect = 5e-17
 Identities = 91/353 (25%), Positives = 154/353 (43%), Gaps = 45/353 (12%)

Query: 16  TPPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNSIYCLYISPL 75
           TP Q  AIP    GR+  + + TGSGKT +  + ++N   R+  +  ++  +  L + P 
Sbjct: 24  TPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLN---RLIGDAVVRTDVRALILLPT 80

Query: 76  KSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNTT 135
           + LA             +KE+  E  ++ T I+ A+  G      ++ +L+K P IL  T
Sbjct: 81  RELAQQ----------TLKEV--ERFSQFTFIKSAMITGGEDFKVQAAVLRKVPDILIGT 128

Query: 136 PETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERL--RELTNQEFLRI 193
           P  +   LN+      LK V+ +I+DE    AD    +  +  ++RL       Q+ L  
Sbjct: 129 PGRMIEHLNAGTL--ILKDVEMLILDE----ADRMLDMGFAEDVQRLVGECAKRQQTLLF 182

Query: 194 GCSATVEPL-EMVADYLGGYYDDGYKRPVEIVD-TRFVRGYDLKLLCPVDDLINKTPKEI 251
             ++    L EM A  L         R  E+ + TR       + +   +D  +K     
Sbjct: 183 SATSGGSALREMTASVLRDPLHLQLNRISELSEGTR-------QQIITAEDTAHK----- 230

Query: 252 SEKLYEKLDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSLSKEKR 311
            EKL   L    +T++  +IFTNTR  A+R+   L        +   +   HG   ++ R
Sbjct: 231 -EKLVHWL-LANETYKKAVIFTNTRVQADRLYGRL------VAEGVKAFVLHGDKDQKDR 282

Query: 312 LELEEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAG 364
               +++K G +K    +     G+D+  +DLV+    P+S    + RIGR G
Sbjct: 283 KLAIDRVKEGGVKVLVATDVAARGLDIEGLDLVINFDMPRSGDEYVHRIGRTG 335