Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score = 69.3 bits (168), Expect = 7e-16
 Identities = 89/395 (22%), Positives = 163/395 (41%), Gaps = 56/395 (14%)

Query: 16  TPPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNSIYCLYISPL 75
           TP Q  AIP +  GR+ L  + TG+GKT +  + ++N+L         Q     + ++P 
Sbjct: 50  TPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKL------NLSQYKPQAIVMAPT 103

Query: 76  KSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNTT 135
           + LA  +         EIK +    G  I G++    +G  S  ++ + LK   HI+  T
Sbjct: 104 RELAIQV-------AAEIKNL----GQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGT 152

Query: 136 PETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFLRIGC 195
           P  +  ++   +    L      I+DE    AD    +     +  + E   +   R+  
Sbjct: 153 PGRVKDLITRDRLH--LDECHTFILDE----ADEMLKMGFVDDVTWIMEQAPESAQRVLF 206

Query: 196 SATVEPLEMVADYLGGYYDDGYKRPVEIVDTRFVRGYDLKLLCPVDDLINKTPKEI---- 251
           SAT+ P+                   EIV+ RF+R  +   +   +  + K  ++     
Sbjct: 207 SATMPPMVK-----------------EIVE-RFLRNPECVDVAGSNQTVAKVEQQYWVVK 248

Query: 252 SEKLYEKLDRLIQTHEN--TLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSLSKE 309
             +  E + RL++T E   +++F  TR   ER+   L  R         +   HG + + 
Sbjct: 249 GVEKDEAMARLLETEETDASIVFVRTRQDTERLADWLCAR------GFKAAALHGDIPQS 302

Query: 310 KRLELEEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAGHGIGK 369
            R    + +K G +     +  +  G+D+P I  V     P  V++ + RIGR G   G+
Sbjct: 303 LRERTVDHIKQGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRA-GR 361

Query: 370 VAKGRIIALDRDELLECAVMLKKAMDGFIDKVHIP 404
             KG+ I L R   +     +++     ++++ +P
Sbjct: 362 --KGKAILLVRTNQIRMLRTIERVTRSSMEEIQLP 394