Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

 Score = 64.3 bits (155), Expect = 1e-14
 Identities = 95/418 (22%), Positives = 169/418 (40%), Gaps = 72/418 (17%)

Query: 13  GYFTPP--QRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNSIYCL 70
           GY TP   Q  AIP +  G++ +  + TG+GKT    + I+  L +  K     N +  L
Sbjct: 20  GYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVRA--NQVRAL 77

Query: 71  YISPLKSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPH 130
            ++P + LA            +I++ +   G  +  ++ A+  G      + + + K   
Sbjct: 78  ILTPTRELA-----------AQIQDNVMLYGRHLP-LKSAVVFGGVKINPQMQRMCKGAD 125

Query: 131 ILNTTPETLAIILNSPKFKEKLKTVQWVIIDEIHALADNK--RGVHLSISLERLRELTNQ 188
           IL  TP  L  + N    K     ++ +++DE   + D    R +H  + L  L E   +
Sbjct: 126 ILVATPGRLMDLYNQNAVK--FDQLEILVLDEADRMLDMGFIRDIHKILKL--LPE--KR 179

Query: 189 EFLRIGCSATVEPLEMVADYLGGYYDDGYKRPVEIVDTRFVRGYDLKLLCPVDDLINKTP 248
           + L    + + E  E+    +          PVEI             + P     N T 
Sbjct: 180 QNLLFSATFSTEIRELAKGLVNN--------PVEIS------------VSPA----NSTA 215

Query: 249 KEISEKLY-----EKLDRLIQ-----THENTLIFTNTRGGAERVLYNLRKRYPEKYDETN 298
           + + + +Y     +K D L++       +  L+F  T+ GA R+   L ++         
Sbjct: 216 RTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQ------GLT 269

Query: 299 SGCHHGSLSKEKRLELEEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQ 358
           +   HG+ S+  R       K+G ++    +     GID+P +  VV    PK  +  + 
Sbjct: 270 AAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVH 329

Query: 359 RIGRAGHGIGKVAK--GRIIALDRDEL-----LECAVMLKKAMDGFIDKVHIPKGPLD 409
           RIGR G   G+V K    + A++  EL     L  A++ +  + GF     +P+  LD
Sbjct: 330 RIGRTGRA-GEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEPTNQLPESKLD 386