Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

 Score = 62.8 bits (151), Expect = 4e-14
 Identities = 86/365 (23%), Positives = 150/365 (41%), Gaps = 44/365 (12%)

Query: 16  TPPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNSIYCLYISPL 75
           T  Q  AIP+   GR+ L  +PTG+GKT +  I  +  L    + +     I  L ++P 
Sbjct: 27  TQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRKAGPARI--LILTPT 84

Query: 76  KSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNTT 135
           + LA  +         + + + K     I  I   +++      E + +L  T  I+  T
Sbjct: 85  RELAMQV-------AEQAQALAKNTRLNIFTITGGVQY-----QEHADILATTQDIVVAT 132

Query: 136 PETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFLRIGC 195
           P  L   +++ +F    + ++W+I+DE    AD    +    +++RL          +  
Sbjct: 133 PGRLLEYIDAERFD--CRAIEWLILDE----ADRMLDMGFGPTVDRLSTECRWRKQTLLF 186

Query: 196 SATVEPLEMVADYLGGYYDDGYKRP--VEIVDTRFVRGYDLKLLCPVDDLINKTPKEISE 253
           SAT+E        + G+  D  K P  V+    R  R    +     DD+ +K   E+ +
Sbjct: 187 SATLE-----GRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKV--ELLK 239

Query: 254 KLYEKLDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSLSKEKRLE 313
           K+      L +  E +++F  TR     +   L K       +       G + +++R  
Sbjct: 240 KI------LTEQAERSIVFLKTRERLADLRAELEKA------QIPCAWIQGEMPQDRRNN 287

Query: 314 LEEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAGHGIGKVAKG 373
              + + G++     +     GID+P I  V+    P+S    L RIGR G   GK  KG
Sbjct: 288 AISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRA-GK--KG 344

Query: 374 RIIAL 378
             I+L
Sbjct: 345 IAISL 349