Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 499 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score = 58.5 bits (140), Expect = 9e-13
 Identities = 86/359 (23%), Positives = 145/359 (40%), Gaps = 56/359 (15%)

Query: 16  TPPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNSIYCLYISPL 75
           TP Q  AIP     R+ L  + TG+GKT S  + ++  L   EK          L + P 
Sbjct: 26  TPIQVGAIPPALQRRDILGIAQTGTGKTASFVLPMLTLL---EKGRARARMPRTLILEPT 82

Query: 76  KSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNTT 135
           + LA  +  N D+     K            +  A+  G  S  E+ + L++   +L  T
Sbjct: 83  RELAAQVAENFDKYGKNHK------------LNIALLIGGVSFDEQDRKLERGADVLICT 130

Query: 136 PETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFLRIGC 195
           P  L  + +  + K  +  V+ ++IDE    AD    +     +ER+ +L       +  
Sbjct: 131 PGRL--LDHCERGKLLMTGVEILVIDE----ADRMLDMGFIPDIERIAKLIPFTRQTLFF 184

Query: 196 SATVEP-LEMVADYLGGYYDDGYKRPVEIVDTRFVRGYD-LKLLCPVDDLINKTPKEISE 253
           SAT+ P ++ +AD                   RF++  + L++       I  T + ++ 
Sbjct: 185 SATMPPEIQKLAD-------------------RFLQNPERLEVARRSSTAITVTQRFVAA 225

Query: 254 --KLYEK---LDRLIQTHE---NTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGS 305
             K YEK   L  LI++ E   N +IF N +     +  +L +         + G  HG 
Sbjct: 226 HGKDYEKRAVLRELIRSQEDLKNAIIFCNRKKDVAELFRSLDRH------GFSVGALHGD 279

Query: 306 LSKEKRLELEEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAG 364
           + +  R+ +    K GN+K    S     G+D+P +  V     P   +  + RIGR G
Sbjct: 280 MDQRSRMAMLANFKDGNIKLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTG 338