Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 516 a.a., putative ATP-dependent RNA helicase RhlE from Phaeobacter inhibens DSM 17395

 Score = 70.9 bits (172), Expect = 2e-16
 Identities = 92/371 (24%), Positives = 151/371 (40%), Gaps = 39/371 (10%)

Query: 16  TPPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNSIYCLYISPL 75
           TP Q  AIP    GR+ L  + TG+GKT S  + +I  L R      +  S   L + P 
Sbjct: 26  TPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITLLARGRARARMPRS---LVLCPT 82

Query: 76  KSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNTT 135
           + LA  +  N D     +K            +  A+  G  S  E+  ++ K   +L  T
Sbjct: 83  RELAAQVAENFDTYTKHLK------------LTKALLIGGVSFKEQDTLIDKGVDVLIAT 130

Query: 136 PETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFLRIGC 195
           P  L  + +  + K  L  V+ +++DE    AD    +     +ER+  LT      +  
Sbjct: 131 PGRL--LDHFERGKLILSDVKVMVVDE----ADRMLDMGFIPDIERIFGLTPFTRQTLFF 184

Query: 196 SATVEP-LEMVADYLGGYYDDGYKRPVEIVDTRFVRGYDLKLLCPVDDLINKTPKEISEK 254
           SAT+ P +E + +            P  +   R     +      V    ++  +E SEK
Sbjct: 185 SATMAPEIERITNTF-------LSAPARVEVARQATTSENITQGVVLFKASRRDREGSEK 237

Query: 255 ---LYEKLDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSLSKEKR 311
              L   +D+  +   N +IF N +   + V  +L+K     YD       HG L + +R
Sbjct: 238 RKLLRHLIDQEGEKCTNAIIFCNRKTDVDIVAKSLKKY---GYDAAPI---HGDLDQSQR 291

Query: 312 LELEEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAGHGIGKVA 371
            +  E  + G+L+F   S     G+D+P +  V     P   +  + RIGR G   G+  
Sbjct: 292 TKTLEGFREGSLRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRA-GRDG 350

Query: 372 KGRIIALDRDE 382
              +I + +DE
Sbjct: 351 SAMMICVPKDE 361