Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 435 a.a., ATP-dependent RNA helicase RhlB (RefSeq) from Shewanella loihica PV-4

 Score = 59.7 bits (143), Expect = 3e-13
 Identities = 81/362 (22%), Positives = 145/362 (40%), Gaps = 55/362 (15%)

Query: 14  YFTPPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQ-NSIYCLYI 72
           Y TP Q L++P +   ++    + TG+GKTL+  +A  N L      +G Q N    + +
Sbjct: 31  YCTPIQALSLPILLEHKDIAGQAQTGTGKTLAFLVATFNHLLTTPIPDGRQLNQPRAIVM 90

Query: 73  SPLKSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHIL 132
           +P + LA  I         +  E+L +     TG++  I +G  S   + K+L K   IL
Sbjct: 91  APTRELAIQI--------AKDGELLAKH----TGLKVGIVYGGESYEVQRKVLDKGVDIL 138

Query: 133 NTTPETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFLR 192
             T  T  II    +    L  +Q V++DE   + D      +     R+ +   +  + 
Sbjct: 139 IGT--TGRIIDYVRQGVINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDANERLNML 196

Query: 193 IGCSATVEPLEMVADYLGGYYDDGYKRPVEIVDTRFVRGYDLKLLCPVDDLINKTPKEIS 252
              + +++  E+  D++           VEI  +                   KT K I+
Sbjct: 197 FSATLSMKVQELAYDHMND------PEKVEIAPS------------------EKTSKNIT 232

Query: 253 EKLY----EKLDRLIQT------HENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCH 302
           E+++    E   RL+ T       E  ++F+NT+   E +  +L      + D    G  
Sbjct: 233 EEIFYPSMEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWAHL------EGDGHRVGLL 286

Query: 303 HGSLSKEKRLELEEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGR 362
            G + ++KR+ + E+   G L     +     G+ +  +  V     P   +  + RIGR
Sbjct: 287 TGDVPQKKRIRILEQFTKGELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGR 346

Query: 363 AG 364
            G
Sbjct: 347 TG 348