Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 746 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis JJ

 Score = 87.0 bits (214), Expect = 4e-21
 Identities = 115/449 (25%), Positives = 193/449 (42%), Gaps = 73/449 (16%)

Query: 17  PPQRLAIPKIHFGR--NTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNSIYCLYISP 74
           PPQ+  I +  F +  N LIC PT SGKTL   +A++N +  +++ + L      L+I P
Sbjct: 17  PPQKKVIDEELFDKTKNFLICIPTASGKTLIGEMALLNHI--LDENKNLTGK-KGLFIVP 73

Query: 75  LKSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNT 134
           LK+LAN       E   E KE  ++ G     I+  +  GD   ++  + L K  HI+ T
Sbjct: 74  LKALAN-------EKFDEFKEKYEKYG-----IKVGLSIGD---FDTKENLSKF-HIIIT 117

Query: 135 TPETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFLRIG 194
           T E L  ++      E +  V   +IDEIH + DN RG  L + L +L+ L  Q    +G
Sbjct: 118 TSEKLDSLMRHEV--EWINDVSLAVIDEIHLIGDNDRGGTLEVILTKLKNLNAQ---IVG 172

Query: 195 CSATVEPLEMVADYLGGYYDDGYKRPVEIVDTRFVRGYDLKLLCPVDDLINKTPKEISEK 254
            SAT+   E ++D+L         RPVE+    +       +  P   +   +   I++ 
Sbjct: 173 LSATIGNPEELSDWLNAKLIVDEWRPVELKKGIYFENELEFVKSPAKKIKQVSKNNITDL 232

Query: 255 LYEKLDRLIQTHENTLIFTNTRGGA--ERVLYNLRKRY---------------------P 291
           + +     ++   + LIF N++  A  E   +NL K                       P
Sbjct: 233 IVDS----VEEKGSCLIFCNSKRNAVGEAKKHNLTKYLTRTEQHELNKLSEEILSILDTP 288

Query: 292 EKYDETNSGC-------HHGSLSKEKRLELEEKLKSGNLKFATTSSSLELGIDMPYIDLV 344
            +  +  S C       HH  L+ + R  +E+  ++  +K    + +L  G+++P    +
Sbjct: 289 TETCKALSECIKKGIAFHHAGLTYQHRKIVEDGFRNRLIKVICCTPTLSAGLNLPCRRAI 348

Query: 345 VQIGSPKSVKTML--------QRIGRAGH-GIGKVAKGRIIALDRDELLECAVMLKKAMD 395
           V+     S   ++        Q IGRAG  G+    +G II +  +   E A    + + 
Sbjct: 349 VRDIKRYSQNGLVDIPRMEIQQCIGRAGRPGLDPYGEG-IIYIKNERDSEKAY---EILT 404

Query: 396 GFIDKVHIPKGPLDVLIQHIYGIAINGYI 424
           G ++ ++       VL  HI G+   G I
Sbjct: 405 GNVENIYSKLANQKVLRIHILGLISTGEI 433