Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 449 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 63.5 bits (153), Expect = 3e-14
 Identities = 88/390 (22%), Positives = 162/390 (41%), Gaps = 54/390 (13%)

Query: 16  TPPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNSIYCLYISPL 75
           T  Q  A+P    G++ +  S TGSGKTL+  +  +  +  I      +     L + P 
Sbjct: 25  TAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRV--ISTRALSKRDPRVLILLPT 82

Query: 76  KSLANDIHVNLDEPL--TEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILN 133
           + LA+ ++  L   +  T+ K I             ++  G+  N +++K L K PH + 
Sbjct: 83  RELAHQVYSQLRLLVANTQYKAI-------------SVLGGENFN-DQAKALAKEPHFIV 128

Query: 134 TTPETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFLR- 192
            TP  +A  L        L  ++ +I+DE    AD    +  +  L+ + E  + +  + 
Sbjct: 129 ATPGRIADHLEQKNLF--LNGLELLILDE----ADRMLDLGFAPQLKAINEAADHKRRQT 182

Query: 193 IGCSATVEPLEM--VADYLGGYYDDGYKRPVEI-VDTRFVRGYDLKLLCPVDDLINKTPK 249
           +  SAT++  E+  +A  L        K P+ + + T      D+     + D ++    
Sbjct: 183 LMFSATLDHSEINEIAAAL-------LKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEA 235

Query: 250 EISEKLYEKLDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSLSKE 309
            +S  L +      ++H+  +IFT TR   ER+   L  +         +    G L + 
Sbjct: 236 LLSRLLSD------ESHKQVIIFTATRADTERLAAKLSAQ------GFATAALSGELKQA 283

Query: 310 KRLELEEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAGHGIGK 369
            R ++ ++   G  +   T+     G+D+  + LV+    PK  +  + RIGR G     
Sbjct: 284 ARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRA--- 340

Query: 370 VAKGRIIAL----DRDELLECAVMLKKAMD 395
            AKG  I+L    D D   +  + L+K  +
Sbjct: 341 GAKGDAISLVGPKDWDSFKKVQLFLRKTFE 370