Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 456 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 62.4 bits (150), Expect = 6e-14
 Identities = 78/378 (20%), Positives = 155/378 (41%), Gaps = 45/378 (11%)

Query: 16  TPPQRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNSIYCLYISPL 75
           T  Q+  IP    G++ + C+ TG+GKT +  + ++ +L     ++ L   +  L ++P 
Sbjct: 25  TQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAKPADKPL---LRALVMTPT 81

Query: 76  KSLANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNTT 135
           + LA  +  N+            ++ ++   ++    +G  +   + K +++   IL  T
Sbjct: 82  RELAIQVCANI------------QKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDILVAT 129

Query: 136 PETLAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFLRIGC 195
           P  L  I+   +F   L +V  ++IDE    AD    +     +E+++ L       +  
Sbjct: 130 PGRLFDIIG--QFNLDLSSVTTLVIDE----ADRMLDLGFVRDIEKVKRLIAPVHQTMLF 183

Query: 196 SATVEPLEMVADYLGGYYDDGYKRPVE--IVDTRFVRGYDLKLLCPVDDLINKTPKEISE 253
           SAT              Y D  K+     +   ++V   +      V+ L+ +  K    
Sbjct: 184 SAT--------------YSDAVKQLSHKMLNQPQWVNVAENTTASTVEQLVYRVDKRRKA 229

Query: 254 KLYEKLDRLIQTHENTLIFTNTRGGAERVLYNLRKRYPEKYDETNSGCHHGSLSKEKRLE 313
           +L  +L          L+F +T+  AE +L  L        D  ++G  HG  ++  R  
Sbjct: 230 ELLSELVGR-NNWRQVLVFASTKECAEHLLQELT------LDGISAGVFHGDKTQGARNR 282

Query: 314 LEEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAGH-GIGKVAK 372
           + +  K+G L+    +     G+D+  + LV+ +  P   +  + RIGR G  G+   A 
Sbjct: 283 VLDDFKAGKLRVLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAI 342

Query: 373 GRIIALDRDELLECAVML 390
             +   D + L E   ++
Sbjct: 343 SFVSPADDEMLAEIEALI 360