Pairwise Alignments

Query, 855 a.a., ATP-dependent helicase from Methanococcus maripaludis S2

Subject, 1121 a.a., ATP-dependent RNA helicase, DEAD/DEAH box family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 87.4 bits (215), Expect = 4e-21
 Identities = 90/353 (25%), Positives = 159/353 (45%), Gaps = 40/353 (11%)

Query: 19  QRLAIPKIHFGRNTLICSPTGSGKTLSSFIAIINELFRIEKEEGLQNSIYCLYISPLKSL 78
           Q  A   I  GR+ ++ +PT SGKT    + ++ +  R             +Y+ PLK+L
Sbjct: 137 QARATDIIRAGRDVVVATPTASGKTFIYNLPVLEQFLR-------DPDARAIYLFPLKAL 189

Query: 79  ANDIHVNLDEPLTEIKEILKEEGNEITGIRHAIRHGDTSNYEKSKMLKKTPHILNTTPET 138
           A D     +          +           AI  GDT+++ + K+    P +L T PE 
Sbjct: 190 AQDQLATFNALTAHWPRDARPAA--------AIYDGDTTDHFRRKIRNAPPPVLLTNPEM 241

Query: 139 --LAIILNSPKFKEKLKTVQWVIIDEIHALADNKRGVHLSISLERLRELTNQEFLR---I 193
             LA++ +  ++     ++  V++DE+H       G H++    RLR +  +   +   +
Sbjct: 242 LHLALLPHHEQWASLFASLTHVVVDEVHTYR-GVLGAHMAQVFRRLRRVCERYGAQPSFV 300

Query: 194 GCSATV-EPLEMVADYLGGYYDDGYKRPVEIVDTRFVRGYDLKLLCPVDDLINKTPKEIS 252
            CSATV  P E+  +  G         P  + ++   +G    +    ++    +P   +
Sbjct: 301 FCSATVGNPGELAHNLTG-------LTPEVVTESGAPQGKRHFIFLDPEE----SPATAA 349

Query: 253 EKLYEKLDRLIQTHENTLIFTNTRGGAERV-LYNLRKRYPEKYDETNSGCHHGSLSKEKR 311
            +L   L   ++    T+++  +R   E V L+   K  P  Y +  S    G L +E+R
Sbjct: 350 IQL---LRSALKRGLRTIVYCQSRRMTELVSLWAAEKSGP--YRDRISAYRAGFLPEERR 404

Query: 312 LELEEKLKSGNLKFATTSSSLELGIDMPYIDLVVQIGSPKSVKTMLQRIGRAG 364
            ++E ++ SG L    T+S+LELGID+  +DL + +G P +V + LQR GR G
Sbjct: 405 -DVEARMASGQLLAVITTSALELGIDIGSLDLCILVGYPGTVMSTLQRGGRVG 456