Pairwise Alignments

Query, 81 a.a., ferredoxin family protein from Methanococcus maripaludis S2

Subject, 181 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 45.8 bits (107), Expect = 2e-10
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 15/76 (19%)

Query: 5   IIVDKEKCTGCGKCYDKCPKGPRIYKKDKDGKYYAFDVSDCHNC---------KICVAAC 55
           +++D+EKCTGCG C   CP      ++D DGK        C+ C           CV+ C
Sbjct: 86  VVLDREKCTGCGLCASACPYAAVSIRED-DGK-----ADKCNMCVELLDRGMKPACVSGC 139

Query: 56  PVGAIQVNLKRHILEK 71
           PV  + V   + +L++
Sbjct: 140 PVECLDVGNLQEVLKR 155



 Score = 31.6 bits (70), Expect = 4e-06
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 14/74 (18%)

Query: 3  VEIIVDKEKCTGCGKC------YDKCPKGPRIYKKDK------DGKYYAFDVSDCHNCK- 49
          V  +  +E C GCG C      +++ P+  R  K D+      DG    +    C +C+ 
Sbjct: 7  VGFVFRQENCVGCGACTVACQIHNELPENHRFRKVDRYEVKRDDGAIDVWLSHSCMHCEN 66

Query: 50 -ICVAACPVGAIQV 62
            C+  CP  A  V
Sbjct: 67 PACLMVCPAKAYHV 80



 Score = 28.5 bits (62), Expect = 3e-05
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 18  CYDKCPKGPRIYKKDKDGKYYAFDVSDCHNCKICVAACPVGAIQV 62
           C   CP   + Y    DG     D   C  C +C +ACP  A+ +
Sbjct: 69  CLMVCPA--KAYHVRDDG-IVVLDREKCTGCGLCASACPYAAVSI 110