Pairwise Alignments

Query, 81 a.a., ferredoxin family protein from Methanococcus maripaludis S2

Subject, 652 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 48.5 bits (114), Expect = 9e-11
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 7   VDKEKCTGCGKCYDKCPKGPRIYKKDKDGKYYAFDVSDCHNCKICVAACPVGAIQVNLKR 66
           VD  +C GCGKC   CP G   + + +         + C  C IC   CP GAIQ+   +
Sbjct: 579 VDVRRCVGCGKCITTCPYGAIEWMELRGEMKARVIETVCQGCGICTVTCPQGAIQL---Q 635

Query: 67  HILEKQV 73
           H  + Q+
Sbjct: 636 HFTDNQI 642



 Score = 43.9 bits (102), Expect = 2e-09
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 20/87 (22%)

Query: 7   VDKEKCTGCGKCYDKCP--KGPRIYKK-------------DKDGKYYAFDVSDCH----- 46
           VD E CTGCG C +KCP  K P  + +                 K    D + C      
Sbjct: 237 VDWELCTGCGLCMEKCPSRKSPDAFNEHVGVTTSINIPFPQAIPKKAIIDPTSCRQFVKG 296

Query: 47  NCKICVAACPVGAIQVNLKRHILEKQV 73
            C +C   CP GAI+ +++  ++ ++V
Sbjct: 297 KCGVCAKVCPTGAIRYDMEDQVVTEEV 323



 Score = 28.5 bits (62), Expect = 1e-04
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 32  DKDGKYYAFDVSDCHNCKICVAACPVGAIQ 61
           + D +    DV  C  C  C+  CP GAI+
Sbjct: 571 ESDPQISQVDVRRCVGCGKCITTCPYGAIE 600