Pairwise Alignments

Query, 81 a.a., ferredoxin family protein from Methanococcus maripaludis S2

Subject, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 49.3 bits (116), Expect = 3e-11
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 3   VEIIVDKEKCTGCGKCYDKCPKGPRIYKKDKDGKYYAFDVSDCHNCKICVAACPVGAIQV 62
           V+  VD + C GCG C DKCP+   +       +  A     C  C +C+AACPV AI++
Sbjct: 194 VKFSVDSDLCIGCGDCTDKCPRDLIVL-----NEMVAVPPKGCPACGLCMAACPVDAIEL 248



 Score = 42.7 bits (99), Expect = 3e-09
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 4   EIIVDKEKCTGCGKCYDKCPKGPRIYKKDKDGKYYAFDVSDCHNCKICVAACPVGAIQVN 63
           E I   E C GCG C  +CP G        +G+    D + C  C IC   CP  AI V 
Sbjct: 127 EPIAVTEDCVGCGVCISECPVG----ALSIEGEKAVVDKNSCIYCSICAQTCPWNAIFVA 182

Query: 64  LKR 66
            K+
Sbjct: 183 GKK 185



 Score = 41.2 bits (95), Expect = 9e-09
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 11/67 (16%)

Query: 5   IIVDKEKCTGCGKCYDKC---------PKGPRIYKKDKDGKYYAFDVSDCHNCKICVAAC 55
           I+ D+EKC  CG C  KC         PKG  +  + K  K   F +  C  C  CV +C
Sbjct: 263 IVWDEEKCAYCGPCAIKCPNNAINVVNPKGLEMPSRKKTEKANEFKM--CIRCGACVQSC 320

Query: 56  PVGAIQV 62
           P  A+++
Sbjct: 321 PNDALRI 327



 Score = 39.3 bits (90), Expect = 4e-08
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 12  CTGCGKCYDKCPKG----PRIYKKDKDG----KYYAFDVSDCHNCKICVAACPVGAIQVN 63
           C GC KC + CP        + +  K      K       DC  C +C++ CPVGA+ + 
Sbjct: 94  CVGCMKCVEACPDDYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALSIE 153

Query: 64  LKRHILEK 71
            ++ +++K
Sbjct: 154 GEKAVVDK 161



 Score = 37.4 bits (85), Expect = 1e-07
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 6   IVDKEKCTGCGKCYDKCP------KGPRIYKKDKDGKYYAFDVSDCHNCKICVAACPVGA 59
           +VDK  C  C  C   CP       G +  K+DK+   ++ D   C  C  C   CP   
Sbjct: 158 VVDKNSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDL 217

Query: 60  IQVN 63
           I +N
Sbjct: 218 IVLN 221



 Score = 36.6 bits (83), Expect = 2e-07
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 12  CTGCGKCYDKCPKGP-RIYKKDKDGKYYA---FDVSDCHNCKICVAACPVGAIQVNLK 65
           C  CG C   CP    RI K   DGK Y    F  + C +C  C+  CP   + +  K
Sbjct: 310 CIRCGACVQSCPNDALRIGKIIHDGKEYERIEFSPNLCDSCGKCIETCPYDMLNLTGK 367



 Score = 28.9 bits (63), Expect = 5e-05
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 41 DVSDCHNCKICVAACPVGAIQVN 63
          +  DC+ CK C  +CP  A+++N
Sbjct: 5  NTEDCYMCKACENSCPTEALKLN 27



 Score = 27.3 bits (59), Expect = 1e-04
 Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 12/76 (15%)

Query: 5  IIVDKEKCTGCGKCYDKCPKGPRIYKKDKDGKYYAFDVSDCHNCKICVAACPVGAIQVNL 64
          I ++ E C  C  C + CP            K   F V  C  C  CV ACP  A+  NL
Sbjct: 2  IKINTEDCYMCKACENSCPTEAL--------KLNPFKV--CQLCGNCVNACPNDAL--NL 49

Query: 65 KRHILEKQVHKLKEKF 80
          +   L  +  K  E F
Sbjct: 50 REIELNGKTIKQIEYF 65



 Score = 26.2 bits (56), Expect = 3e-04
 Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 12  CTGCGKCYDKCPKGPRIYKKDKDGKYYAFDVSDCHNCKICVAAC 55
           C  CGKC + CP          +     F    C  C  C+ AC
Sbjct: 347 CDSCGKCIETCPYDMLNLTGKPEKPLEGF----CVMCLKCIEAC 386